[OpenFOAM] paraview: cannot connect to X server :0.0

amanbearpig · November 26, 2013, 12:14

Hello, I am fairly new to Linux and OpenFOAM, and have followed the instructions from OpenFOAMWiki for installation of OpenFOAM on a RHEL6 machine. The installation went just fine, and running a test case icoFoam/cavity from the tutorials worked just fine as well. However, when I try and run paraFoam, I get the following error:

"No protocol specified
paraview: cannot connect to X server :0.0"

I'm not sure how to proceed, I asked the system admin here and they were unsure as well. Has anyone seen this error before, or know of a way to resolve this issue?

Please forgive me if this is a very simple issue or if I am simply doing something incorrectly, as I said I am quite new to Linux and OF in general, and am the first person to use OF at my location.

Thank you!

wyldckat · November 26, 2013, 16:42

Greetings amanbearpig (South Park reference?

),

Are you working directly on the machine with RHEL 6?
If not, which commands/applications are you using to connect to it and from which Operating System?

Best regards,
Bruno

amanbearpig · November 27, 2013, 09:47

Hello Bruno,

Yes, it is a South Park reference - an old username, and for simplicity I have continued to use it for many things (harder to forget!).

I am working directly on the RHEL 6 machine. Thanks for all your help!

wyldckat · November 27, 2013, 18:10

Hi amanbearpig,

Quote:

Originally Posted by amanbearpig

Yes, it is a South Park reference - an old username, and for simplicity I have continued to use it for many things (harder to forget!).

Nice!

OK, I should have left what I had originally written in the post I was going to do yesterday, so I'll try to recall what I wrote back then:

In the first link on my signature, you should find this link: Related issues to ParaView with OpenFOAM - Fixes and solutions
There you'll find this:

Quote:

ParaFoam error could not find a decent visual - solution in post #4

Try to run the command given on that post, before running paraFoam. For example:
Code:
```
export LIBGL_ALWAYS_INDIRECT=y
paraFoam
```

Best regards,
Bruno

amanbearpig · December 2, 2013, 10:46

Hi Bruno,

I tried your suggestion, but it seems to have no effect, I still get the exact same error:

"No protocol specified
paraview: cannot connect to X server :0.0"

Thanks for all your time and help!

wyldckat · December 8, 2013, 15:39

Hi amanbearpig,

Sorry, very busy week.

I know I've seen this problem before... but usually the problem occurs when we try to use a GUI over an "ssh -X" connection.

Try running this command:

Code:

echo $DISPLAY

If it gives you:

Code:

:0.0

then try running a graphical text editor from the command line, such as gedit:

Code:

gedit

It should give you the same error as ParaView did.

Beyond this, it would help to either see an image of what you're seeing or a description of the steps you take up until you run paraview.

Best regards,
Bruno

amanbearpig · December 12, 2013, 14:22

Hi Bruno,

Thanks for the help. Yes, echo $DISPLAY shows :0.0, and trying to run gedit also gives an error. I think this error is related to my user permissions, because if I login as root I can run gedit just fine. I'll have to speak to the admins here about that.

However, logging in as root did not fix my Paraview issue. (OpenFOAM is installed under my user account). When I login as root, since my bashrc is different, I can't simply enter "paraFoam", so I went to the folder where paraview is located and entered ./paraview (as root). This gives me a completely different error:

/home/*username*/OpenFOAM/ThirdParty-2.2.2/platforms/linux64Gcc45/paraview-3.12.0/lib/paraview-3.12/paraview: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.14' not found (required by /home/*username*/OpenFOAM/ThirdParty-2.2.2/platforms/linux64Gcc45/paraview-3.12.0/lib/paraview-3.12/libvtkPVServerManager.so)

I checked into this a bit, and it appears that the libstdc++.so.6 with RHEL6 here only has up through GLIBCXX_3.4.13. I found similar errors searching online (for other programs) and one of the suggestions was to download a newer libstdc++.so and link it (I think the only I have linked here is .13, I downloaded a .17 that I found online in the aforementioned discussion, though it was not a native RHEL file, it was for Debian instead - the online help indicated this wouldn't be an issue, and I am new to Linux so I took their word for it).

When I linked the libstdc++.so.6 to this newer version, Paraview worked! However, it broke other things - the man command no longer worked, and I could no longer open Firefox, for example.

I then deleted the newer libstdc++ version 17 file and relinked it to the original v13 one. After thinking about it awhile I went and downloaded an older version of Paraview (v 3.10). When I installed this, I could run Paraview as root!

Because it only works as root, and is a different install and is not setup to work with OpenFOAM yet, I can't run the paraFoam command, but at least I have paraview itself working! I've just been running the foamToVTK command and then opening up the files as root to do visualization. I will speak to the admins here about the apparent permissions issue with my user account.

Do you have any thoughts or suggestions? I'm just glad to have a working version of paraview, regardless of whether or not I can run it through paraFoam or not. It's a bit more of a hassle but it works. Like I said I am new to Linux, so there may be a very simple solution I am overlooking or not understanding! Thank you!

wyldckat · December 15, 2013, 13:01

Hi amanbearpig,

Running ParaView and OpenFOAM as root is a veeeery bad idea.

I'm guessing that your user-name does not have "video" permissions... but it's really weird. If you are logged in locally, I assume that you are logged in graphically and not with only a terminal text window. And if you are graphically logged in and are able to launch GUI applications from the desktop with the mouse, then you should also be able to launch GUI applications from the command line.

My guess is that the "DISPLAY" variable is incorrectly defined. Check the contents of the folder "/tmp/.X11-unix/". It should indicate which displays are being used. If only the "X0" file is present, then the "DISPLAY" variable is probably properly defined.

Best regards,
Bruno

kkpal · March 6, 2015, 02:05

Dear amanbearpig
I've met the same problem with you. Have you solved the problem?
Best regards!

kkpal · March 7, 2015, 01:52

running

Code:

xhost +

as root simply solves this problem.

StyroFoam · May 25, 2018, 23:19

I solved the same problem by installing XMing from https://sourceforge.net/projects/xming/
then everything works fine.

Hope it helps!

November 26, 2013, 12:14	paraview: cannot connect to X server :0.0	#1
amanbearpig Member Join Date: Apr 2011 Posts: 57 Rep Power: 15	Hello, I am fairly new to Linux and OpenFOAM, and have followed the instructions from OpenFOAMWiki for installation of OpenFOAM on a RHEL6 machine. The installation went just fine, and running a test case icoFoam/cavity from the tutorials worked just fine as well. However, when I try and run paraFoam, I get the following error: "No protocol specified paraview: cannot connect to X server :0.0" I'm not sure how to proceed, I asked the system admin here and they were unsure as well. Has anyone seen this error before, or know of a way to resolve this issue? Please forgive me if this is a very simple issue or if I am simply doing something incorrectly, as I said I am quite new to Linux and OF in general, and am the first person to use OF at my location. Thank you! Vinay94 likes this.

November 26, 2013, 16:42		#2
wyldckat Retired Super Moderator Bruno Santos Join Date: Mar 2009 Location: Lisbon, Portugal Posts: 10,981 Blog Entries: 45 Rep Power: 128	Greetings amanbearpig (South Park reference? ), Are you working directly on the machine with RHEL 6? If not, which commands/applications are you using to connect to it and from which Operating System? Best regards, Bruno __________________ OpenFOAM: FAQ \| Getting started Forum: How to get help, to post code/output and forum guide Read this before sending me PM

December 8, 2013, 15:39		#6
wyldckat Retired Super Moderator Bruno Santos Join Date: Mar 2009 Location: Lisbon, Portugal Posts: 10,981 Blog Entries: 45 Rep Power: 128	Hi amanbearpig, Sorry, very busy week. I know I've seen this problem before... but usually the problem occurs when we try to use a GUI over an "ssh -X" connection. Try running this command: Code: echo $DISPLAY If it gives you: Code: :0.0 then try running a graphical text editor from the command line, such as gedit: Code: gedit It should give you the same error as ParaView did. Beyond this, it would help to either see an image of what you're seeing or a description of the steps you take up until you run paraview. Best regards, Bruno amanbearpig likes this. __________________ OpenFOAM: FAQ \| Getting started Forum: How to get help, to post code/output and forum guide Read this before sending me PM

December 15, 2013, 13:01		#8
wyldckat Retired Super Moderator Bruno Santos Join Date: Mar 2009 Location: Lisbon, Portugal Posts: 10,981 Blog Entries: 45 Rep Power: 128	Hi amanbearpig, Running ParaView and OpenFOAM as root is a veeeery bad idea. I'm guessing that your user-name does not have "video" permissions... but it's really weird. If you are logged in locally, I assume that you are logged in graphically and not with only a terminal text window. And if you are graphically logged in and are able to launch GUI applications from the desktop with the mouse, then you should also be able to launch GUI applications from the command line. My guess is that the "DISPLAY" variable is incorrectly defined. Check the contents of the folder "/tmp/.X11-unix/". It should indicate which displays are being used. If only the "X0" file is present, then the "DISPLAY" variable is probably properly defined. Best regards, Bruno __________________ OpenFOAM: FAQ \| Getting started Forum: How to get help, to post code/output and forum guide Read this before sending me PM

March 7, 2015, 01:52		#10
kkpal Senior Member Join Date: Jan 2013 Posts: 135 Rep Power: 13	running Code: xhost + as root simply solves this problem. wyldckat likes this.

November 27, 2013, 09:47		#3
amanbearpig Member Join Date: Apr 2011 Posts: 57 Rep Power: 15	Hello Bruno, Yes, it is a South Park reference - an old username, and for simplicity I have continued to use it for many things (harder to forget!). I am working directly on the RHEL 6 machine. Thanks for all your help!

December 2, 2013, 10:46		#5
amanbearpig Member Join Date: Apr 2011 Posts: 57 Rep Power: 15	Hi Bruno, I tried your suggestion, but it seems to have no effect, I still get the exact same error: "No protocol specified paraview: cannot connect to X server :0.0" Thanks for all your time and help!

December 12, 2013, 14:22		#7
amanbearpig Member Join Date: Apr 2011 Posts: 57 Rep Power: 15	Hi Bruno, Thanks for the help. Yes, echo $DISPLAY shows :0.0, and trying to run gedit also gives an error. I think this error is related to my user permissions, because if I login as root I can run gedit just fine. I'll have to speak to the admins here about that. However, logging in as root did not fix my Paraview issue. (OpenFOAM is installed under my user account). When I login as root, since my bashrc is different, I can't simply enter "paraFoam", so I went to the folder where paraview is located and entered ./paraview (as root). This gives me a completely different error: /home/username/OpenFOAM/ThirdParty-2.2.2/platforms/linux64Gcc45/paraview-3.12.0/lib/paraview-3.12/paraview: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.14' not found (required by /home/username/OpenFOAM/ThirdParty-2.2.2/platforms/linux64Gcc45/paraview-3.12.0/lib/paraview-3.12/libvtkPVServerManager.so) I checked into this a bit, and it appears that the libstdc++.so.6 with RHEL6 here only has up through GLIBCXX_3.4.13. I found similar errors searching online (for other programs) and one of the suggestions was to download a newer libstdc++.so and link it (I think the only I have linked here is .13, I downloaded a .17 that I found online in the aforementioned discussion, though it was not a native RHEL file, it was for Debian instead - the online help indicated this wouldn't be an issue, and I am new to Linux so I took their word for it). When I linked the libstdc++.so.6 to this newer version, Paraview worked! However, it broke other things - the man command no longer worked, and I could no longer open Firefox, for example. I then deleted the newer libstdc++ version 17 file and relinked it to the original v13 one. After thinking about it awhile I went and downloaded an older version of Paraview (v 3.10). When I installed this, I could run Paraview as root! Because it only works as root, and is a different install and is not setup to work with OpenFOAM yet, I can't run the paraFoam command, but at least I have paraview itself working! I've just been running the foamToVTK command and then opening up the files as root to do visualization. I will speak to the admins here about the apparent permissions issue with my user account. Do you have any thoughts or suggestions? I'm just glad to have a working version of paraview, regardless of whether or not I can run it through paraFoam or not. It's a bit more of a hassle but it works. Like I said I am new to Linux, so there may be a very simple solution I am overlooking or not understanding! Thank you!

March 6, 2015, 02:05		#9
kkpal Senior Member Join Date: Jan 2013 Posts: 135 Rep Power: 13	Dear amanbearpig I've met the same problem with you. Have you solved the problem? Best regards!

May 25, 2018, 23:19		#11
StyroFoam New Member Join Date: May 2018 Posts: 1 Rep Power: 0	I solved the same problem by installing XMing from https://sourceforge.net/projects/xming/ then everything works fine. Hope it helps! wyldckat likes this.

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