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#1 |
Member
sibo
Join Date: Oct 2016
Location: Chicago
Posts: 55
Rep Power: 9 ![]() |
Hello All,
I am trying to run an airfoil case using simpleFoam in parallel with 4 processors in cluster. I can load mpi successfully using "module load openmpi-x86_64 " and the domain is decomposed successfully. But when I type: "mpirun -np 4 simpleFoam -parallel > case.log", I run into trouble. Code:
[0] [0] [0] --> FOAM FATAL IO ERROR: [0] wrong token type - expected word, found on line 22 the punctuation token '[' [0] [0] file: /mnt/store1/home/sli218/try1/processor0/../constant/transportProperties::nu at line 22. [0] [0] From function operator>>(Istream&, word&) [0] in file primitives/strings/word/wordIO.C at line 74. [0] FOAM parallel run exiting [0] [1] [1] [1] --> FOAM FATAL IO ERROR: [1] wrong token type - expected word, found on line 0 the punctuation token '[' [1] [1] file: IOstream::nu at line 0. [1] [1] From function operator>>(Istream&, word&) [1] in file primitives/strings/word/wordIO.C at line 74. [1] FOAM parallel run exiting [1] [2] [2] [2] --> FOAM FATAL IO ERROR: [2] wrong token type - expected word, found on line 0 the punctuation token '[' [2] [2] file: IOstream::nu at line 0. [2] [2] From function operator>>(Istream&, word&) [2] in file primitives/strings/word/wordIO.C at line 74. [2] FOAM parallel run exiting [2] [3] [3] [3] --> FOAM FATAL IO ERROR: [3] wrong token type - expected word, found on line 0 the punctuation token '[' [3] [3] file: IOstream::nu at line 0. [3] [3] From function operator>>(Istream&, word&) [3] in file primitives/strings/word/wordIO.C at line 74. [3] FOAM parallel run exiting [3] -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD with errorcode 1. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- -------------------------------------------------------------------------- mpirun has exited due to process rank 2 with PID 21185 on node login-1.extreme.uic.edu exiting improperly. There are two reasons this could occur: 1. this process did not call "init" before exiting, but others in the job did. This can cause a job to hang indefinitely while it waits for all processes to call "init". By rule, if one process calls "init", then ALL processes must call "init" prior to termination. 2. this process called "init", but exited without calling "finalize". By rule, all processes that call "init" MUST call "finalize" prior to exiting or it will be considered an "abnormal termination" This may have caused other processes in the application to be terminated by signals sent by mpirun (as reported here). -------------------------------------------------------------------------- [login-1.extreme.uic.edu:21179] 3 more processes have sent help message help-mpi-api.txt / mpi-abort [login-1.extreme.uic.edu:21179] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages Can someone suggest how I can fix this? Thanks a lot!!! Sibo |
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#2 |
Member
sibo
Join Date: Oct 2016
Location: Chicago
Posts: 55
Rep Power: 9 ![]() |
Code:
/*--------------------------------*- C++ -*----------------------------------*\ | ========= | | | \\ / F ield | OpenFOAM: The Open Source CFD Toolbox | | \\ / O peration | Version: 3.0.1 | | \\ / A nd | Web: www.OpenFOAM.org | | \\/ M anipulation | | \*---------------------------------------------------------------------------*/ FoamFile { version 2.0; format ascii; class dictionary; location "constant"; object transportProperties; } // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * // transportModel Newtonian; rho [1 -3 0 0 0 0 0] 1.2; nu [0 2 -1 0 0 0 0] 1.7e-05; CrossPowerLawCoeffs { nu0 nu0 [ 0 2 -1 0 0 0 0 ] 1e-06; nuInf nuInf [ 0 2 -1 0 0 0 0 ] 1e-06; m m [ 0 0 1 0 0 0 0 ] 1; n n [ 0 0 0 0 0 0 0 ] 1; } BirdCarreauCoeffs { nu0 nu0 [ 0 2 -1 0 0 0 0 ] 1e-06; nuInf nuInf [ 0 2 -1 0 0 0 0 ] 1e-06; k k [ 0 0 1 0 0 0 0 ] 0; n n [ 0 0 0 0 0 0 0 ] 1; } // ************************************************************************* // |
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#3 |
Senior Member
Join Date: Aug 2013
Posts: 407
Rep Power: 16 ![]() |
Hi,
Are the two versions of OF the same (the one on your laptop and the one in cluster)? From your error message: Code:
wrong token type - expected word, found on line 0 the punctuation token '[' Code:
nu [0 2 -1 0 0 0 0] 1.7E-05; Code:
nu nu [0 2 -1 0 0 0 0] 1.7E-05; Cheers, Antimony |
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#4 |
Senior Member
Bobby
Join Date: Oct 2012
Location: Michigan
Posts: 454
Rep Power: 15 ![]() |
Hey sibo
What Antimony said, is correct. You need to be careful about these stuff. Are u using same versions of OpenFoam on the cluster and your laptop. It seems that you are facing a template error due to version conflicts. Regards |
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#5 |
Member
sibo
Join Date: Oct 2016
Location: Chicago
Posts: 55
Rep Power: 9 ![]() |
Hi Antimony and Babak,
Thanks for your reply! It really enlightened me. I will see if it works now. |
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Tags |
cluster, mpi error |
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