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February 19, 2020, 15:58 |
Issue with *Cloud.evolve()
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#1 |
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Join Date: Aug 2017
Posts: 32
Rep Power: 9 |
Howdy Yall,
I was able to get the kinematic cloud merged with Sonic foam and achieved some visually agreeable results for the ma 3 forward facing step tutorial. Momentum is coupled and the results look, upon visual inspection, good. The problem is that I am trying to incorporate heat transfer now and I switched from kinematicCloud -> thermoCloud. From my understanding thermoCloud should just add some functionality and act as a wrapper to kinematicCloud. I made some modifications to the creatFields.H file and coupled the cloud to the continuum energy equation through (+ dustCloud.Sh(e)) My code compiles and I go to run my test case, the simulation proceeds as normal except for the fact that once the particle injection time is reached, the simulation crashes without an error. Specifically it crashes on the evolution step of a particular time step. I am attaching my case files in this top post and will make a comment that has my code files Pardon the language in my log text. Code:
Evolving dustCloud Did OpenFOAM Fucking Freeze Again? Solving 2-D cloud dustCloud Cloud: dustCloud Current number of parcels = 0 Current mass in system = 0 Linear momentum = (0 0 0) |Linear momentum| = 0 Linear kinetic energy = 0 Average particle per parcel = 0 Injector model1: - parcels added = 0 - mass introduced = 0 Parcel fate: system (number, mass) - escape = 0, 0 Parcel fate: patch (number, mass) inlet - escape = 0, 0 - stick = 0, 0 Parcel fate: patch (number, mass) outlet - escape = 0, 0 - stick = 0, 0 Parcel fate: patch (number, mass) bottom - escape = 0, 0 - stick = 0, 0 Parcel fate: patch (number, mass) top - escape = 0, 0 - stick = 0, 0 Parcel fate: patch (number, mass) obstacle - escape = 0, 0 - stick = 0, 0 Parcel fate: patch (number, mass) defaultFaces - escape = 0, 0 - stick = 0, 0 Temperature min/max = 0, 0 Not Yet. ExecutionTime = 10.93 s ClockTime = 11 s Time = 0.1002 Courant Number mean: 0.0477675 max: 0.0615826 diagonal: Solving for rho, Initial residual = 0, Final residual = 0, No Iterations 0 PIMPLE: iteration 1 smoothSolver: Solving for Ux, Initial residual = 0.00116844, Final residual = 3.81639e-07, No Iterations 1 smoothSolver: Solving for Uy, Initial residual = 0.00166205, Final residual = 1.54533e-06, No Iterations 1 smoothSolver: Solving for e, Initial residual = 0.00103972, Final residual = 7.14875e-07, No Iterations 1 smoothSolver: Solving for p, Initial residual = 0.000908961, Final residual = 6.32946e-07, No Iterations 1 diagonal: Solving for rho, Initial residual = 0, Final residual = 0, No Iterations 0 time step continuity errors : sum local = 1.6622e-07, global = -4.03005e-08, cumulative = 1.31019e-05 Evolving dustCloud Did OpenFOAM Fucking Freeze Again? Solving 2-D cloud dustCloud ------------------------------------------------------- Primary job terminated normally, but 1 process returned a non-zero exit code.. Per user-direction, the job has been aborted. ------------------------------------------------------- -------------------------------------------------------------------------- mpirun detected that one or more processes exited with non-zero status, thus causing the job to be terminated. The first process to do so was: Process name: [[18412,1],1] Exit code: 144 -------------------------------------------------------------------------- It should be noted that this error is just an MPI error and running in serial will have the code crash on "Solving 2-D cloud dustCloud" I've seen it mentioned on the forums that the lagragian wall rebound treatment can couse hanging, though I am crashing, if the mesh is trash near the wall. Despite not using the rebound model I checked the mesh just to make sure it wasn't the cause using> checkMesh -allGeometry The output of the check is: Code:
/*---------------------------------------------------------------------------*\ | ========= | | | \\ / F ield | OpenFOAM: The Open Source CFD Toolbox | | \\ / O peration | Version: v1912 | | \\ / A nd | Website: www.openfoam.com | | \\/ M anipulation | | \*---------------------------------------------------------------------------*/ Build : _f3950763fe-20191219 OPENFOAM=1912 Arch : "LSB;label=64;scalar=64" Exec : checkMesh -allGeometry Date : Feb 19 2020 Time : 12:37:15 Host : AEK997 PID : 27748 I/O : uncollated Case : /forwardStepLPTT nProcs : 1 trapFpe: Floating point exception trapping enabled (FOAM_SIGFPE). fileModificationChecking : Monitoring run-time modified files using timeStampMaster (fileModificationSkew 10) allowSystemOperations : Allowing user-supplied system call operations // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * // Create time Create mesh for time = 0 Enabling all geometry checks. Time = 0 Mesh stats points: 32898 internal points: 0 faces: 64832 internal faces: 31936 cells: 16128 faces per cell: 6 boundary patches: 6 point zones: 0 face zones: 0 cell zones: 0 Overall number of cells of each type: hexahedra: 16128 prisms: 0 wedges: 0 pyramids: 0 tet wedges: 0 tetrahedra: 0 polyhedra: 0 Checking topology... Boundary definition OK. Cell to face addressing OK. Point usage OK. Upper triangular ordering OK. Face vertices OK. Number of regions: 1 (OK). Checking patch topology for multiply connected surfaces... Patch Faces Points Surface topology Bounding box inlet 80 162 ok (non-closed singly connected) (0 0 -0.05) (0 1 0.05) outlet 64 130 ok (non-closed singly connected) (3 0.2 -0.05) (3 1 0.05) bottom 48 98 ok (non-closed singly connected) (0 0 -0.05) (0.6 0 0.05) top 240 482 ok (non-closed singly connected) (0 1 -0.05) (3 1 0.05) obstacle 208 418 ok (non-closed singly connected) (0.6 0 -0.05) (3 0.2 0.05) defaultFaces 32256 32898 ok (non-closed singly connected) (0 0 -0.05) (3 1 0.05) Checking faceZone topology for multiply connected surfaces... No faceZones found. Checking basic cellZone addressing... No cellZones found. Checking geometry... Overall domain bounding box (0 0 -0.05) (3 1 0.05) Mesh has 2 geometric (non-empty/wedge) directions (1 1 0) Mesh has 2 solution (non-empty) directions (1 1 0) All edges aligned with or perpendicular to non-empty directions. Boundary openness (1.18817e-18 6.76884e-17 -2.78861e-15) OK. Max cell openness = 1.73472e-16 OK. Max aspect ratio = 1 OK. Minimum face area = 0.00015625. Maximum face area = 0.00125. Face area magnitudes OK. Min volume = 1.5625e-05. Max volume = 1.5625e-05. Total volume = 0.252. Cell volumes OK. Mesh non-orthogonality Max: 0 average: 0 Non-orthogonality check OK. Face pyramids OK. Max skewness = 2.13163e-13 OK. Coupled point location match (average 0) OK. Face tets OK. Min/max edge length = 0.0125 0.1 OK. All angles in faces OK. Face flatness (1 = flat, 0 = butterfly) : min = 1 average = 1 All face flatness OK. Cell determinant (wellposedness) : minimum: 0.125 average: 0.490118 Cell determinant check OK. Concave cell check OK. Face interpolation weight : minimum: 0.5 average: 0.5 Face interpolation weight check OK. Face volume ratio : minimum: 1 average: 1 Face volume ratio check OK. Mesh OK. End Code:
/*--------------------------------*- C++ -*----------------------------------*\ | ========= | | | \\ / F ield | OpenFOAM: The Open Source CFD Toolbox | | \\ / O peration | Version: 4.x | | \\ / A nd | Web: www.OpenFOAM.org | | \\/ M anipulation | | \*---------------------------------------------------------------------------*/ FoamFile { version 2.0; format ascii; class dictionary; location "constant"; object kinematicCloudProperties; } // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * // solution { active true; coupled true; transient yes; cellValueSourceCorrection off; maxCo 0.3; interpolationSchemes { rho cell; U cellPoint; thermo:mu cell; T cell; Cp cell; kappa cell; p cell; G cell; DUcDt cell; } integrationSchemes { U Euler; T analytical; } sourceTerms { schemes { rho semiImplicit 1; U semiImplicit 1; Yi semiImplicit 1; h semiImplicit 1; } } } constantProperties { rho0 8800; youngsModulus 1.3e5; poissonsRatio 0.35; T0 1; Cp0 4187; epsilon0 1; f0 0.5; } subModels { particleForces { sphereDrag; gravity; pressureGradient { U U; } } injectionModels { model1 { type patchInjection; patch inlet; duration 1; parcelsPerSecond 1390885; massTotal 40; parcelBasisType fixed; flowRateProfile constant 1; nParticle 1; SOI 0.1; U0 (3 0 0); T0 3; sizeDistribution { type fixedValue; fixedValueDistribution { value 0.00007; } } } } dispersionModel none; patchInteractionModel standardWallInteraction; standardWallInteractionCoeffs { type rebound; e 0.97; mu 0.09; } surfaceFilmModel none; stochasticCollisionModel none; radiation off; heatTransferModel none; RanzMarshallCoeffs { BirdCorrection true; } collisionModel none; pairCollisionCoeffs { maxInteractionDistance 0.00007; writeReferredParticleCloud no; pairModel pairSpringSliderDashpot; pairSpringSliderDashpotCoeffs { useEquivalentSize no; alpha 0.12; b 1.5; mu 0.52; cohesionEnergyDensity 0; collisionResolutionSteps 12; }; wallModel wallSpringSliderDashpot; wallSpringSliderDashpotCoeffs { useEquivalentSize no; collisionResolutionSteps 12; youngsModulus 1e10; poissonsRatio 0.23; alpha 0.12; b 1.5; mu 0.43; cohesionEnergyDensity 0; }; } } cloudFunctions { voidFraction1 { type voidFraction; } } Code:
// Solve the Momentum equation MRF.correctBoundaryVelocity(U); fvVectorMatrix UEqn ( fvm::ddt(rho, U) + fvm::div(phi, U) + MRF.DDt(rho, U) + turbulence->divDevRhoReff(U) == fvOptions(rho, U) + dustParcels.SU(U) ); UEqn.relax(); fvOptions.constrain(UEqn); if (pimple.momentumPredictor()) { solve(UEqn == -fvc::grad(p)); fvOptions.correct(U); K = 0.5*magSqr(U); } EEQN Code:
{ fvScalarMatrix EEqn ( fvm::ddt(rho, e) + fvm::div(phi, e) + fvc::ddt(rho, K) + fvc::div(phi, K) + fvc::div(fvc::absolute(phi/fvc::interpolate(rho), U), p, "div(phiv,p)") - fvm::laplacian(turbulence->alphaEff(), e) == fvOptions(rho, e) + dustParcels.Sh(e) ); EEqn.relax(); fvOptions.constrain(EEqn); EEqn.solve(); fvOptions.correct(e); thermo.correct(); } My Create Fields File Code:
{ #include "readGravitationalAcceleration.H" Info<< "Reading thermophysical properties\n" << endl; autoPtr<psiThermo> pThermo(psiThermo::New(mesh)); psiThermo& thermo = pThermo(); thermo.validate(args.executable(), "h", "e"); SLGThermo slgThermo(mesh, thermo); volScalarField& p = thermo.p(); // const volScalarField& T = thermo.T(); // const volScalarField& psi = thermo.psi(); multivariateSurfaceInterpolationScheme<scalar>::fieldTable fields; fields.add(thermo.he()); volScalarField rho ( IOobject ( "rho", runTime.timeName(), mesh ), thermo.rho() ); Info<< "Reading field U\n" << endl; volVectorField U ( IOobject ( "U", runTime.timeName(), mesh, IOobject::MUST_READ, IOobject::AUTO_WRITE ), mesh ); #include "compressibleCreatePhi.H" mesh.setFluxRequired(p.name()); Info<< "Creating turbulence model\n" << endl; autoPtr<compressible::turbulenceModel> turbulence ( compressible::turbulenceModel::New ( rho, U, phi, thermo ) ); #include "createK.H" #include "createMRF.H" Info<< "Reading transportProperties\n" <<endl; IOdictionary transportProperties ( IOobject ( "transportProperties", runTime.constant(), mesh, IOobject::MUST_READ_IF_MODIFIED, IOobject::NO_WRITE ) ); dimensionedScalar rhoInfValue ( transportProperties.lookup("rhoInf") ); dimensionedScalar invrhoInf("invrhoInf",(1.0/rhoInfValue)); volScalarField rhoInf ( IOobject ( "rho", runTime.timeName(), mesh, IOobject::NO_READ, IOobject::AUTO_WRITE ), mesh, rhoInfValue ); volScalarField mu ( IOobject ( "mu", runTime.timeName(), mesh, IOobject::NO_READ, IOobject::AUTO_WRITE ), turbulence->nu()*rhoInfValue ); const word thermoCloudName ( args.optionLookupOrDefault<word>("CloudName", "dustCloud") ); Info<< "\nConstructing dust cloud" << endl; basicThermoCloud dustParcels ( thermoCloudName, rhoInf, U, g, slgThermo ); #include "createFvOptions.H" } Code:
/*--------------------------------------------------------------------------- \*---------------------------------------------------------------------------*/ #include "fvCFD.H" #include "SLGThermo.H" #include "psiThermo.H" #include "turbulentFluidThermoModel.H" #include "pimpleControl.H" #include "fvOptions.H" #include "basicThermoCloud.H" #include "radiationModel.H" #include "pressureControl.H" #include "localEulerDdtScheme.H" #include "fvcSmooth.H" // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * // int main(int argc, char *argv[]) { argList::addNote ( "Transient solver for trans-sonic/supersonic, turbulent flow" " of a compressible gas." ); #include "postProcess.H" #include "addCheckCaseOptions.H" #include "setRootCaseLists.H" #include "createTime.H" #include "createMesh.H" // #include "readGravitationalAcceleration.H" #include "createControl.H" #include "createFields.H" #include "createFieldRefs.H" #include "initContinuityErrs.H"turbulence->validate(); // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * // Info<< "\nStarting time loop\n" << endl; while (runTime.loop()) { Info<< "Time = " << runTime.timeName() << nl << endl; #include "compressibleCourantNo.H" #include "rhoEqn.H" // --- Pressure-velocity PIMPLE corrector loop while (pimple.loop()) { #include "UEqn.H" #include "EEqn.H" // --- Pressure corrector loop while (pimple.correct()) { #include "pEqn.H" } if (pimple.turbCorr()) { turbulence->correct(); } } rho = thermo.rho(); Info << "\nEvolving " << dustParcels.name() << endl; Info << "\nDid OpenFOAM Fucking Freeze Again?" << endl; dustParcels.evolve(); Info << "\nNot Yet." << endl; runTime.write(); runTime.printExecutionTime(Info); } Info<< "End\n" << endl; return 0; } // ************************************************************************* // Given the lack of an error code, the complicated nature of the Lagrangian source code and my, relative, inexperience with openFOAM solver programming I'm quite at a loss here. I know that this has to caused by user error, but I haven't pinned down a specific reason for why within the lagrangian evolve() function if you want additional files I'll upload them in the comments if it is requested. Thanks yall! Last edited by siefer92; February 20, 2020 at 13:01. |
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February 20, 2020, 02:35 |
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#2 |
Member
Join Date: Dec 2018
Location: Darmstadt, Germany
Posts: 87
Rep Power: 8 |
Hey there, the error is a bit unprecise. What is the error message when running in serial mode? Maybe you could try using gdb to output more information regarding the error and its backtrace?
Code:
$gdb yourApplicationName Code:
run Code:
bt |
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February 20, 2020, 10:19 |
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#3 |
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Join Date: Aug 2017
Posts: 32
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That's the thing, there is no error when running in serial mode it just crashes. Ill attach
Code:
Evolving dustCloud Did OpenFOAM Fucking Freeze Again? Solving 2-D cloud dustCloud Cloud: dustCloud Current number of parcels = 0 Current mass in system = 0 Linear momentum = (0 0 0) |Linear momentum| = 0 Linear kinetic energy = 0 Average particle per parcel = 0 Injector model1: - parcels added = 0 - mass introduced = 0 Parcel fate: system (number, mass) - escape = 0, 0 Parcel fate: patch (number, mass) inlet - escape = 0, 0 - stick = 0, 0 Parcel fate: patch (number, mass) outlet - escape = 0, 0 - stick = 0, 0 Parcel fate: patch (number, mass) bottom - escape = 0, 0 - stick = 0, 0 Parcel fate: patch (number, mass) top - escape = 0, 0 - stick = 0, 0 Parcel fate: patch (number, mass) obstacle - escape = 0, 0 - stick = 0, 0 Parcel fate: patch (number, mass) defaultFaces - escape = 0, 0 - stick = 0, 0 Temperature min/max = 0, 0 Not Yet. ExecutionTime = 10.99 s ClockTime = 11 s Time = 0.1002 Courant Number mean: 0.0477675 max: 0.0616668 diagonal: Solving for rho, Initial residual = 0, Final residual = 0, No Iterations 0 PIMPLE: iteration 1 smoothSolver: Solving for Ux, Initial residual = 0.00116857, Final residual = 2.52804e-09, No Iterations 1 smoothSolver: Solving for Uy, Initial residual = 0.0016621, Final residual = 4.25478e-09, No Iterations 1 smoothSolver: Solving for e, Initial residual = 0.00103959, Final residual = 2.14555e-07, No Iterations 1 smoothSolver: Solving for p, Initial residual = 0.000908946, Final residual = 2.11092e-07, No Iterations 1 diagonal: Solving for rho, Initial residual = 0, Final residual = 0, No Iterations 0 time step continuity errors : sum local = 5.54642e-08, global = -4.17947e-08, cumulative = 4.64595e-06 Evolving dustCloud Did OpenFOAM Fucking Freeze Again? Solving 2-D cloud dustCloud |
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February 20, 2020, 10:47 |
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#4 |
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Location: Darmstadt, Germany
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Ok, so if I understand you correctly: The application just stays in some kind of endless loop and you have to kill the job manually?
Just looked over your injection model setup. It looks like you are injecting with 40 kg/s. From your simulation I can also see that the timestep used seems to be 2e-4s, which would mean a total of 8e-3 kg injected per time step. With your additional size distribution and an estimated density of 1000 kg/m3, I estimated the total of number of injected parcels per timestep to 45 million. That would basically explain the "freezing", which would be in fact just a very, very long computation (until your computer runs out of memory ). Maybe have a look at the way this type of injection should be used. |
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February 20, 2020, 11:28 |
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#5 |
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If the process simply froze and was stuck calculating, your logic would be sound. However, the process simply dies.
there is no process to kill once it get's to this point. openFOAM simply dies |
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February 20, 2020, 11:50 |
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#6 |
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Ok. Can you then try to use a simpler injection model (like manualInjection)?
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February 20, 2020, 12:45 |
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#7 |
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Did that,
and it freezes at the same place. New injection model: Code:
injectionModels { model1 { type manualInjection; patch inlet; duration 1; parcelsPerSecond 13905; massTotal 40; parcelBasisType fixed; flowRateProfile constant 1; nParticle 1; SOI 0; positionsFile "dustPositions"; U0 (3 0 0); T0 3; sizeDistribution { type fixedValue; fixedValueDistribution { value 0.00007; } } } Code:
/*--------------------------------*- C++ -*----------------------------------*\ | ========= | | | \\ / F ield | OpenFOAM: The Open Source CFD Toolbox | | \\ / O peration | Version: v1912 | | \\ / A nd | Website: www.openfoam.com | | \\/ M anipulation | | \*---------------------------------------------------------------------------*/ FoamFile { version 2.0; format ascii; location ""; class vectorField; object limestonePositions; } // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * // ( (1.5 .5 0.0) ) // ************************************************************************* // Right now I am adding comments to the KinematicCloud.C and ThermoCloud.C templates and trying to manually find where it dies. here is how my code ends now : Code:
No MRF models present Reading transportProperties Constructing dust cloud Constructing particle forces Selecting particle force sphereDrag Selecting particle force gravity Constructing cloud functions none Constructing particle injection models Creating injector: model1 Selecting injection model manualInjection Constructing 2-D injection Choosing nParticle to be a fixed value, massTotal variable now does not determine anything. Selecting distribution model fixedValue Selecting dispersion model none Selecting patch interaction model standardWallInteraction Selecting stochastic collision model none Selecting surface film model none Selecting U integration scheme Euler Selecting heat transfer model none Selecting T integration scheme analytical No finite volume options present Starting time loop Time = 0.0002 Courant Number mean: 0.0479762 max: 0.048 diagonal: Solving for rho, Initial residual = 0, Final residual = 0, No Iterations 0 PIMPLE: iteration 1 smoothSolver: Solving for Ux, Initial residual = 0.646268, Final residual = 0.167319, No Iterations 1000 smoothSolver: Solving for Uy, Initial residual = 0, Final residual = 0, No Iterations 0 smoothSolver: Solving for e, Initial residual = 1, Final residual = 3.1659e-07, No Iterations 2 smoothSolver: Solving for p, Initial residual = 1, Final residual = 3.54324e-07, No Iterations 2 diagonal: Solving for rho, Initial residual = 0, Final residual = 0, No Iterations 0 time step continuity errors : sum local = 1.78486e-05, global = 1.78481e-05, cumulative = 1.78481e-05 Evolving dustCloud Did OpenFOAM Fucking Freeze Again? Can the Cloud Evolve? Yes Solving 2-D cloud dustCloud Starting Pre-Evolve I appreciate your suggestions / help thus far though |
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February 20, 2020, 13:10 |
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#8 |
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So the code fails at the following:
line 211 of: src/lagrangian/intermediate/clouds/Templates/KinematicCloud/KinematicCloud.C the function: injectors_.inject(cloud, td); still trying to figure out where to go from here |
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February 20, 2020, 13:20 |
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#9 |
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Try this config maybe. I know that it works well for me.
Code:
injectionModels { OneSingleDroplet { type manualInjection; massTotal 6.038715e-07; parcelBasisType mass; SOI 0; positionsFile "cloudPositions"; U0 (1 0 0); sizeDistribution { type uniform; uniformDistribution { minValue 4e-5; maxValue 4e-05; } } } } |
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February 20, 2020, 13:28 |
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#10 |
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That doesn't work either :/
I am inside the injection function: lagrangian/intermediate/lnInclude/InjectionModelList.C and have found my code doesn't get past this section: Code:
forAll(*this, i) { this->operator[](i).inject(cloud, td); } |
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February 20, 2020, 14:00 |
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#11 |
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What do you mean by "your code"? Did you change your standard openfoam installation?
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February 20, 2020, 14:04 |
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#12 |
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I didn't change the standard installation. Though, I am trying to combine ThermoCloud functionality with sonicFoam like I was able to do with KinematicCollidingCloud and sonicFoam.
this is a custom solver. |
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February 20, 2020, 14:33 |
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#13 |
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By adding the line:
Code:
Info << "\n" << this->operator[](i).massTotal() << endl; Code:
this->operator[](i).inject(cloud, td); so I know that it is taking in the cloudProperties input that you suggested |
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February 24, 2020, 19:03 |
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#14 |
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Were you able to solve your issue?
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March 19, 2024, 04:49 |
adding the necessary libraries
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#15 |
New Member
Khomenko Maxim
Join Date: Aug 2015
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Though the post is old but rather relevant on a search for coupling thermo to kinematic clouds it still have no clear decision. One may suggest that a successfully compiled solver could crash on running if you did not add necessary libraries to the solver. Could you please share your Make/options file?
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Tags |
crash, lpt, no error, openfoam, thermocloud |
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