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List of chemical species from a boundary condition

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Old   August 30, 2018, 08:06
Unhappy List of chemical species from a boundary condition
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Hello,

I am coding a new boundary condition in OpenFoam 6. This boundary condition is to be used with the "reactingFoam" solver.
I want to acces the list of chemical species defined from this boundary condition.

I can access the mass fraction of a single specie using :
Code:
const Foam::fvPatchField<scalar>& W_N2 = this->patch().lookupPatchField<volScalarField, scalar>("N2");
However, i would like to have access to the complete list of species mass fractions. Just like in the reactingFoam solver :

Code:
const PtrList<volScalarField>& Y = thermo.composition().Y();
This doesnt work as thermo is only defined in the solver's "createFields.H" file.
Is there anyway to get access to it from the boundary condition ?

Last edited by Benben; August 31, 2018 at 06:35.
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Old   August 30, 2018, 22:34
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Maybe you can get thermo by lookupObject?
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Old   August 31, 2018, 03:53
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Hello, thank you for your interest in my problem.
It seems like it worked.

To create a "psiReactionThermo" object (which is the type of thermo), i have to include "psiReactionThermo.H" in my boundary condition header file, and add the lines :
Code:
-I$(LIB_SRC)/thermophysicalModels/specie/lnInclude \
-I$(LIB_SRC)/thermophysicalModels/reactionThermo/lnInclude \
-I$(LIB_SRC)/transportModels/compressible/lnInclude \
-I$(LIB_SRC)/thermophysicalModels/basic/lnInclude \
-I$(LIB_SRC)/thermophysicalModels/chemistryModel/lnInclude \
-I$(LIB_SRC)/ODE/lnInclude \
-I$(LIB_SRC)/combustionModels/lnInclude
to the "Make/options" file.

Then in the code of my boundary condition, i add :
Code:
const psiReactionThermo& thermo = this->db().lookupObject<psiReactionThermo>("thermophysicalProperties");
const PtrList<volScalarField>& Y = thermo.composition().Y();
It compiles and i yet have to try to use it.

However i have no clue on why i have access to it from the "ObjectRegistry". I am not very familiar with this class. In the declaration of "thermo", nothing is done to add it to a registry. What other variables do we have access to from there ? every variable created ?

Last edited by Benben; August 31, 2018 at 05:19. Reason: error in the code
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Old   August 31, 2018, 04:03
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https://openfoam.top/en/thermodynamicLIB/
You can have a look at this UML, and you'll find that IOdictionary is the topmost base class of psiReactionThermo.
Since IOdictionary is often registried to the mesh, so will psiReactionThermo.
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Old   August 31, 2018, 05:35
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I have another issue :

when calling
Code:
thermo.composition()
the program crashes and prints to the console
Code:
pure virtual method called
It seems that "psiReactionThermo" doesnt implement "composition()" (see documentation here).
How should i proceed to get the composition object ?
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Old   August 31, 2018, 05:50
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It's probable that i should define it as an "hePsiThermo" (documentation here) as this is what i am asking openfoam to use in my dictionnary in "constant/thermophysicalProperties":
Code:
thermoType
{
    type            hePsiThermo;
    mixture         reactingMixture;
    transport       sutherland;
    thermo          janaf;
    energy          sensibleEnthalpy;
    equationOfState perfectGas;
    specie          specie;
}
I will try it.
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Old   August 31, 2018, 06:13
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"hePsiThermo" takes two templates class, and i can't manage to declare a instance of the class :/

i Tried :

Code:
const hePsiThermo<psiReactionThermo, reactingMixture<psiReactionThermo>>& thermo = this->db().lookupObject<hePsiThermo<psiReactionThermo, reactingMixture<psiReactionThermo>>("t");
And it gave me :

Code:
/opt/openfoam6/src/thermophysicalModels/reactionThermo/lnInclude/multiComponentMixture.H:61:28: error: cannot declare field 'Foam::multiComponentMixture<Foam::psiReactionThermo>::mixture_' to be of abstract type 'Foam::psiReactionThermo'
         mutable ThermoType mixture_;
                            ^
In file included from evaporatingZinc_RDMP/evaporatingZinc_RDMPFvPatchScalarField.H:81:0,
                 from evaporatingZinc_RDMP/evaporatingZinc_RDMPFvPatchScalarField.C:26:
/opt/openfoam6/src/thermophysicalModels/reactionThermo/lnInclude/psiReactionThermo.H:52:7: note:   because the following virtual functions are pure within 'Foam::psiReactionThermo':
 class psiReactionThermo
I must be doing things wrong, i will try to look for examples in the code of "thermo = lookupObject("
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Old   August 31, 2018, 07:37
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Try this?
Code:
const PtrList<volScalarField>& Y = 
dynamic_cast<hePsiThermo<psiReactionThermo,SpecieMixture<reactingMixture<gasHThermoPhysics>>>&>
(this->db().lookupObject<psiReactionThermo>("thermo")).composition().Y();
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Old   August 31, 2018, 11:29
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I tried as you proposed :

Code:
const psiReactionThermo& hepsi_thermo = this->db().lookupObject<psiReactionThermo>("thermophysicalProperties");
const hePsiThermo<psiReactionThermo,SpecieMixture<reactingMixture<gasHThermoPhysics>>>& thermo 
    = 
    dynamic_cast<const hePsiThermo<psiReactionThermo,SpecieMixture<reactingMixture<gasHThermoPhysics>>>&>(hepsi_thermo);
but it raised me
Code:
terminate called after throwing an instance of 'std::bad_cast'
  what():  std::bad_cast
If I understand correctly, "hePsiThermo<psiReactionThermo,SpecieMixture<react ingMixture<gasHThermoPhysics>>>" is not derived from "psiReactionThermo".

How did you know what types should be used for the cast ? In the code I only found the definition of "thermo" in "createFields.H". And it is defined as a psiReactionThermo :
Code:
autoPtr<psiReactionThermo> pThermo(psiReactionThermo::New(mesh));
psiReactionThermo& thermo = pThermo();
Is it "psiReactionThermo::New(mesh)" that would actually return an object of a type derived from "psiReactionThermo" ?
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Old   August 31, 2018, 11:54
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I tried by cheating with pointers :

Code:
const psiReactionThermo& hepsi_thermo = this->db().lookupObject<psiReactionThermo>("thermophysicalProperties");
    hePsiThermo<psiReactionThermo,SpecieMixture<reactingMixture<gasHThermoPhysics>>> 
* thermo = & hepsi_thermo;
It fails at compile, and displays :

Code:
error: cannot convert 
'const Foam::psiReactionThermo*'
to
'Foam::hePsiThermo<Foam::psiReactionThermo, Foam::SpecieMixture<Foam::reactingMixture<Foam::sutherlandTransport<Foam::species::thermo<Foam::janafThermo<Foam::perfectGas<Foam::specie> >, Foam::sensibleEnthalpy> > > > >*'
in initialization
    hePsiThermo<psiReactionThermo,SpecieMixture<reactingMixture<gasHThermoPhysics>>> * thermo = & hepsi_thermo;
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Old   September 3, 2018, 11:41
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I managed to solve my problem.

The right way to do it was to define

Code:
#include "psiReactionThermo.H"
const psiReactionThermo& thermo = this->db().lookupObject<psiReactionThermo>("thermophysicalProperties");
const PtrList<volScalarField>& Y = thermo.composition().Y();
and add
Code:
    -I$(LIB_SRC)/thermophysicalModels/specie/lnInclude \
    -I$(LIB_SRC)/thermophysicalModels/reactionThermo/lnInclude \
    -I$(LIB_SRC)/transportModels/compressible/lnInclude \
    -I$(LIB_SRC)/thermophysicalModels/basic/lnInclude \
    -I$(LIB_SRC)/thermophysicalModels/chemistryModel/lnInclude
To the "Make/options" file.

However, the first call of the boundary conditions is made when thermo is beeing built (as mass fractions, rho, and T are initialized by thermo). So, when the boundary condition is called for the first time, thermo is not completly initialized yet. So i had to implement a bypass so that the first call to the boundary condition initializes to some garbage, and doesnt call "thermo.composition()".

The boundary condition is still updated before solving the first time step, so no problem for the resolution (i verified this by outputing some text in the console). The only thing is that paraFoam will show some garbage for the boundary condition at time t=0.
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