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[OpenFOAM.org] Installing OpenFoam 3.0.1 on cluster |
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April 24, 2016, 08:16 |
Installing OpenFoam 3.0.1 on cluster
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#1 |
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Join Date: Dec 2013
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I'm trying to install OpenFoam 3.0.1 on a scientific linux cluster.
I've compiled the Third party section (except for paraview). I'm using the openmpi in this folder and had to compile gcc-5.3.0 because the version on the cluster was too old. Running the following gives Code:
#ldd /home/ashep/OpenFOAM/OpenFOAM-3.0.1/platforms/linux64Gcc51DPInt32Opt/lib/libOpenFOAM.so linux-vdso.so.1 => (0x00007ffff7ffe000) libPstream.so => not found libz.so.1 => /lib64/libz.so.1 (0x00007ffff73fc000) libstdc++.so.6 => /home/ashep/OpenFOAM/ThirdParty-3.0.1/platforms/linux64/gcc-5.3.0/lib64/libstdc++.so.6 (0x00007ffff706e000) libm.so.6 => /lib64/libm.so.6 (0x00007ffff6dea000) libgcc_s.so.1 => /home/ashep/OpenFOAM/ThirdParty-3.0.1/platforms/linux64/gcc-5.3.0/lib64/libgcc_s.so.1 (0x00007ffff6bd3000) libc.so.6 => /lib64/libc.so.6 (0x00007ffff6832000) /lib64/ld-linux-x86-64.so.2 (0x0000003685600000) Code:
Checking basic setup... ------------------------------------------------------------------------------- Shell: bash Host: secluster OS: Linux version 2.6.32-220.2.1.el6.x86_64 ------------------------------------------------------------------------------- Checking main OpenFOAM env variables... ------------------------------------------------------------------------------- Environment_variable Set_to_file_or_directory Valid Crit ------------------------------------------------------------------------------- $WM_PROJECT_INST_DIR /home/ashep/OpenFOAM yes yes $WM_PROJECT_USER_DIR /home/ashep/OpenFOAM/ashep-3.0.1 no no $WM_THIRD_PARTY_DIR /home/ashep/OpenFOAM/ThirdParty-3.0.1 yes yes ------------------------------------------------------------------------------- Checking the OpenFOAM env variables set on the PATH... ------------------------------------------------------------------------------- Environment_variable Set_to_file_or_directory Valid Path Crit ------------------------------------------------------------------------------- $WM_PROJECT_DIR /home/ashep/OpenFOAM/OpenFOAM-3.0.1 yes yes yes $FOAM_APPBIN ...1/platforms/linux64GccDPInt32Opt/bin no yes $FOAM_SITE_APPBIN ...1/platforms/linux64GccDPInt32Opt/bin no no $FOAM_USER_APPBIN ...1/platforms/linux64GccDPInt32Opt/bin no no $WM_DIR .../ashep/OpenFOAM/OpenFOAM-3.0.1/wmake yes yes yes ------------------------------------------------------------------------------- Checking the OpenFOAM env variables set on the LD_LIBRARY_PATH... ------------------------------------------------------------------------------- Environment_variable Set_to_file_or_directory Valid Path Crit ------------------------------------------------------------------------------- $FOAM_LIBBIN ...1/platforms/linux64GccDPInt32Opt/lib no yes $FOAM_SITE_LIBBIN ...1/platforms/linux64GccDPInt32Opt/lib no no $FOAM_USER_LIBBIN ...1/platforms/linux64GccDPInt32Opt/lib no no $MPI_ARCH_PATH .../platforms/linux64Gcc/openmpi-1.10.0 yes no yes ------------------------------------------------------------------------------- Third party software ------------------------------------------------------------------------------- Software Version Location ------------------------------------------------------------------------------- flex 2.5.35 /usr/bin/flex gcc 5.3.0 /home/ashep/OpenFOAM/ThirdParty-3.0.1/gcc-5.3.0/bin/gcc g++ 5.3.0 /home/ashep/OpenFOAM/ThirdParty-3.0.1/gcc-5.3.0/bin/g++ gzip 1.3.12 /bin/gzip tar 1.23 /bin/tar icoFoam WARNING: Conflicting installations: OpenFOAM settings : /home/ashep/OpenFOAM/OpenFOAM-3.0.1/platforms/linux64GccDPInt32Opt/bin/icoFoam current path : CRITICAL ERROR ------------------------------------------------------------------------------- Summary ------------------------------------------------------------------------------- Base configuration ok. The foam installation contains 1 critical error(s). Review the output for warning messages and consult the installation guide for troubleshooting. Done Last edited by hello177; April 24, 2016 at 09:36. |
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April 24, 2016, 09:35 |
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#2 |
New Member
Alpha
Join Date: Dec 2013
Posts: 2
Rep Power: 0 |
Ok, turns out I'd forgotten to change bashrc to not use the system compiler
Seems to have compiled fine now. |
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