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Problems building Paraview 3.12 on Gentoo Linux |
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February 23, 2013, 18:15
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Problems building Paraview 3.12 on Gentoo Linux
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#1 |
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New Member
Stephen Bosch
Join Date: Feb 2013
Location: Germany
Posts: 22
Rep Power: 13  |
I seem unable to build Paraview 3.12 after an apparently successful build of OpenFOAM 2.1.1.
I am running 64-bit Gentoo Linux: Code:
Linux thinkpad 3.4.9-gentoo #12 SMP Sun Nov 18 10:10:03 CET 2012 x86_64 Intel(R) Core(TM)2 Duo CPU T9400 @ 2.53GHz GenuineIntel GNU/Linux Code:
#!/bin/bash export FOAM_INST_DIR=/usr/local/OpenFOAM source /usr/local/OpenFOAM/OpenFOAM-2.1.1/etc/bashrc When I try to build Paraview, I get the following error: Code:
Scanning dependencies of target TestingDemo
[ 81%] Building CXX object Qt/Testing/Examples/CMakeFiles/TestingDemo.dir/TestingDemo.cxx.o
[ 81%] Building CXX object Qt/Testing/Examples/CMakeFiles/TestingDemo.dir/moc_TestingDemo.cxx.o
Linking CXX executable ../../../bin/TestingDemo
[ 81%] Built target TestingDemo
[ 81%] Building CXX object Qt/Widgets/CMakeFiles/pqWidgets.dir/pqHelpWindow.cxx.o
/usr/local/OpenFOAM/ThirdParty-2.1.1/ParaView-3.12.0/Qt/Widgets/pqHelpWindow.cxx:36:23: schwerwiegender Fehler: QHelpEngine: Datei oder Verzeichnis nicht gefunden
Kompilierung beendet.
make[2]: *** [Qt/Widgets/CMakeFiles/pqWidgets.dir/pqHelpWindow.cxx.o] Fehler 1
make[1]: *** [Qt/Widgets/CMakeFiles/pqWidgets.dir/all] Fehler 2
make: *** [all] Fehler 2
---
Installation complete for paraview-3.12.0
Set environment variables:
export ParaView_DIR=/usr/local/OpenFOAM/ThirdParty-2.1.1/platforms/linux64Gcc/paraview-3.12.0
export PATH=$ParaView_DIR/bin:$PATH
export PV_PLUGIN_PATH=$FOAM_LIBBIN/paraview-3.12
---
Done
For example, when I run foamInstallationTest in the shell that I built OpenFOAM in, it (partly) works: Code:
Executing ./foamInstallationTest: Checking basic setup... ------------------------------------------------------------------------------- Shell: bash Host: thinkpad_T500 OS: Linux version 3.4.9-gentoo ------------------------------------------------------------------------------- Checking main OpenFOAM env variables... ------------------------------------------------------------------------------- Environment_variable Set_to_file_or_directory Valid Crit ------------------------------------------------------------------------------- $WM_PROJECT_INST_DIR /usr/local/OpenFOAM yes yes $WM_PROJECT_USER_DIR /root/OpenFOAM/root-2.1.1 no no $WM_THIRD_PARTY_DIR /usr/local/OpenFOAM/ThirdParty-2.1.1 yes yes ------------------------------------------------------------------------------- Checking the OpenFOAM env variables set on the PATH... ------------------------------------------------------------------------------- Environment_variable Set_to_file_or_directory Valid Path Crit ------------------------------------------------------------------------------- $WM_PROJECT_DIR /usr/local/OpenFOAM/OpenFOAM-2.1.1 yes yes yes $FOAM_APPBIN ...-2.1.1/platforms/linux64GccDPOpt/bin yes yes yes $FOAM_SITE_APPBIN .../2.1.1/platforms/linux64GccDPOpt/bin no no $FOAM_USER_APPBIN ...-2.1.1/platforms/linux64GccDPOpt/bin no no $WM_DIR /usr/local/OpenFOAM/OpenFOAM-2.1.1/wmake yes yes yes ------------------------------------------------------------------------------- Checking the OpenFOAM env variables set on the LD_LIBRARY_PATH... ------------------------------------------------------------------------------- Environment_variable Set_to_file_or_directory Valid Path Crit ------------------------------------------------------------------------------- $FOAM_LIBBIN ...-2.1.1/platforms/linux64GccDPOpt/lib yes yes yes $FOAM_SITE_LIBBIN .../2.1.1/platforms/linux64GccDPOpt/lib no no $FOAM_USER_LIBBIN ...-2.1.1/platforms/linux64GccDPOpt/lib no no $MPI_ARCH_PATH ...1/platforms/linux64Gcc/openmpi-1.5.3 no yes ------------------------------------------------------------------------------- Third party software ------------------------------------------------------------------------------- Software Version Location ------------------------------------------------------------------------------- flex 2.5.35 /usr/bin/flex ./foamInstallationTest: Zeile 267: [: -lt: Einstelliger (unärer) Operator erwartet. ./foamInstallationTest: Zeile 269: [: -gt: Einstelliger (unärer) Operator erwartet. ./foamInstallationTest: Zeile 274: [: -lt: Einstelliger (unärer) Operator erwartet. ./foamInstallationTest: Zeile 276: [: -gt: Einstelliger (unärer) Operator erwartet. ./foamInstallationTest: Zeile 281: [: !=: Einstelliger (unärer) Operator erwartet. gcc /usr/bin/gcc gzip 1.5 /bin/gzip tar 1.26 /bin/tar icoFoam ...M/OpenFOAM-2.1.1/platforms/linux64GccDPOpt/bin/icoFoam ------------------------------------------------------------------------------- Summary ------------------------------------------------------------------------------- Base configuration ok. Critical systems ok. Done Code:
Executing ./foamInstallationTest:
Checking basic setup...
-------------------------------------------------------------------------------
Shell: bash
Host: thinkpad_T500
OS: Linux version 3.4.9-gentoo
-------------------------------------------------------------------------------
Checking main OpenFOAM env variables...
-------------------------------------------------------------------------------
Environment_variable Set_to_file_or_directory Valid Crit
-------------------------------------------------------------------------------
$WM_PROJECT_INST_DIR /usr/local/OpenFOAM yes yes
$WM_PROJECT_USER_DIR /home/sfbosch/OpenFOAM/sfbosch-2.1.1 no no
$WM_THIRD_PARTY_DIR /usr/local/OpenFOAM/ThirdParty-2.1.1 yes yes
-------------------------------------------------------------------------------
Checking the OpenFOAM env variables set on the PATH...
-------------------------------------------------------------------------------
Environment_variable Set_to_file_or_directory Valid Path Crit
-------------------------------------------------------------------------------
$WM_PROJECT_DIR /usr/local/OpenFOAM/OpenFOAM-2.1.1 yes no yes
$FOAM_APPBIN ...-2.1.1/platforms/linux64GccDPOpt/bin yes no yes
$FOAM_SITE_APPBIN .../2.1.1/platforms/linux64GccDPOpt/bin no no
$FOAM_USER_APPBIN ...-2.1.1/platforms/linux64GccDPOpt/bin no no
$WM_DIR /usr/local/OpenFOAM/OpenFOAM-2.1.1/wmake yes no yes
-------------------------------------------------------------------------------
Checking the OpenFOAM env variables set on the LD_LIBRARY_PATH...
-------------------------------------------------------------------------------
Environment_variable Set_to_file_or_directory Valid Path Crit
-------------------------------------------------------------------------------
$FOAM_LIBBIN ...-2.1.1/platforms/linux64GccDPOpt/lib yes no yes
$FOAM_SITE_LIBBIN .../2.1.1/platforms/linux64GccDPOpt/lib no no
$FOAM_USER_LIBBIN ...-2.1.1/platforms/linux64GccDPOpt/lib no no
$MPI_ARCH_PATH ...1/platforms/linux64Gcc/openmpi-1.5.3 no yes
-------------------------------------------------------------------------------
Third party software
-------------------------------------------------------------------------------
Software Version Location
-------------------------------------------------------------------------------
flex 2.5.35 /usr/bin/flex
./foamInstallationTest: Zeile 267: [: -lt: Einstelliger (unärer) Operator erwartet.
./foamInstallationTest: Zeile 269: [: -gt: Einstelliger (unärer) Operator erwartet.
./foamInstallationTest: Zeile 274: [: -lt: Einstelliger (unärer) Operator erwartet.
./foamInstallationTest: Zeile 276: [: -gt: Einstelliger (unärer) Operator erwartet.
./foamInstallationTest: Zeile 281: [: !=: Einstelliger (unärer) Operator erwartet.
gcc /usr/bin/gcc
gzip 1.5 /bin/gzip
tar 1.26 /bin/tar
icoFoam
WARNING: Conflicting installations:
OpenFOAM settings : /usr/local/OpenFOAM/OpenFOAM-2.1.1/platforms/linux64GccDPOpt/bin/icoFoam
current path :
CRITICAL ERROR
-------------------------------------------------------------------------------
Summary
-------------------------------------------------------------------------------
Base configuration ok.
The foam installation contains 1 critical error(s).
Review the output for warning messages and consult
the installation guide for troubleshooting.
Done
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February 23, 2013, 18:33
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#2 |
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Retired Super Moderator
Bruno Santos
Join Date: Mar 2009
Location: Lisbon, Portugal
Posts: 10,981
Blog Entries: 45
Rep Power: 128  |
Greetings Stephen and welcome to the forum!
The foamInstallationTest script isn't bullet proof  It's known to have issues on certain shells.As for running it as root and as normal user, the variable "$WM_PROJECT_USER_DIR" is still pointing to the normal user, which hints at something not properly done somewhere along the line. The script you've got: Code:
#!/bin/bash export FOAM_INST_DIR=/usr/local/OpenFOAM source /usr/local/OpenFOAM/OpenFOAM-2.1.1/etc/bashrc Code:
./scriptname #or bash scriptname Code:
source scriptname #or . scriptname I tried searching for indications on what "3.4.9-gentoo" provides, but I didn't find it. So could you please indicate which Gcc version you're using? Knowing this would make it easier to help you figure out how to fix ParaView's building process. Most likely, the fix is shown in Step #7 on these instructions: http://openfoamwiki.net/index.php/In...#openSUSE_12.2 - namely: Code:
cd $WM_THIRD_PARTY_DIR sed -i -e 's/ClearAndSelect = Clear | Select/ClearAndSelect = static_cast<int>(Clear) | static_cast<int>(Select)/' \ ParaView-3.12.0/Qt/Core/pqServerManagerSelectionModel.h Best regards, Bruno
__________________
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February 24, 2013, 14:06
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#3 |
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New Member
Stephen Bosch
Join Date: Feb 2013
Location: Germany
Posts: 22
Rep Power: 13 |
Hi Bruno, thank you for the friendly welcome
 When I use "source" OFinit instead of executing the script directly, foamInstallationTest completes without errors. However, I now get this at the end of every command output: Code:
bin #
echo -ne "\033_${USER}@${HOSTNAME%%.*}:${PWD/#$HOME/~}\033\\"
bin #
bash version is 4.2.37: Code:
# bash --version bash --version GNU bash, Version 4.2.37(1)-release (x86_64-pc-linux-gnu) Copyright (C) 2011 Free Software Foundation, Inc. Lizenz GPLv3+: GNU GPL Version 3 oder jünger <http://gnu.org/licenses/gpl.html> Dies ist freie Software. Sie darf verändert und verteilt werden. Für dieses Programm besteht keinerlei Garantie. Code:
Portage 2.1.11.31 (default/linux/amd64/10.0, gcc-4.5.4, glibc-2.15-r3, 3.4.9-gentoo x86_64) ================================================================= System uname: Linux-3.4.9-gentoo-x86_64-Intel-R-_Core-TM-2_Duo_CPU_T9400_@_2.53GHz-with-gentoo-2.1 Timestamp of tree: Sat, 23 Feb 2013 20:30:01 +0000 ld GNU ld (GNU Binutils) 2.22 app-shells/bash: 4.2_p37 dev-java/java-config: 2.1.11-r3 dev-lang/python: 2.7.3-r2, 3.2.3 dev-util/cmake: 2.8.9 dev-util/pkgconfig: 0.27.1 sys-apps/baselayout: 2.1-r1 sys-apps/openrc: 0.11.8 sys-apps/sandbox: 2.5 sys-devel/autoconf: 2.13, 2.69 sys-devel/automake: 1.9.6-r3, 1.11.6 sys-devel/binutils: 2.22-r1 sys-devel/gcc: 4.5.4 sys-devel/gcc-config: 1.7.3 sys-devel/libtool: 2.4-r1 sys-devel/make: 3.82-r4 sys-kernel/linux-headers: 3.6 (virtual/os-headers) sys-libs/glibc: 2.15-r3 Repositories: gentoo science kde ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="* -@EULA" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -march=native -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" CXXFLAGS="-O2 -march=native -pipe" DISTDIR="/usr/portage/distfiles" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="ftp://ftp.wh2.tu-dresden.de/pub/mirrors/gentoo ftp://ftp.uni-erlangen.de/pub/mirrors/gentoo http://ftp.uni-erlangen.de/pub/mirrors/gentoo ftp://ftp-stud.hs-esslingen.de/pub/Mirrors/gentoo/ rsync://ftp-stud.hs-esslingen.de/gentoo/ http://ftp-stud.hs-esslingen.de/pub/Mirrors/gentoo/" LANG="de_DE.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j3" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/var/lib/layman/science /var/lib/layman/kde" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="X aac acl acpi alsa amd64 amr bash-completion berkdb bzip2 cairo cli consolekit cracklib crypt cxx dbus device-mapper dri encode exif extras faac flac fortran gdbm gimp gpm hwdb iconv icu ipv6 jpeg kde laptop lcms lm_sensors mmx modules mp3 mudflap multilib ncurses nls nptl nsplugin opengl openmp pam parport pcre pdf perl png policykit python qt3support readline rtmp sdl semantic-desktop session sqlite sse sse2 sse3 ssl ssse3 startup-notification taglib tcpd theora threads tiff truetype udev unicode usb v4l video vorbis x264 xml zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="evdev keyboard mouse synaptics" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="de en fr nb nb_NO en_GB en_CA" PHP_TARGETS="php5-3" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_2" RUBY_TARGETS="ruby18 ruby19" USERLAND="GNU" VIDEO_CARDS="intel vesa radeon fglrx" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON Code:
cd $WM_THIRD_PARTY_DIR sed -i -e 's/ClearAndSelect = Clear | Select/ClearAndSelect = static_cast<int>(Clear) | static_cast<int>(Select)/' \ ParaView-3.12.0/Qt/Core/pqServerManagerSelectionModel.h My current Qt version is 4.8.2. Installing Qt 4.6 would be a major headache and is likely to break my system. If Paraview is so Qt-sensitive, why isn't the required Qt library packaged with it? It would really simplify the build... Do you have any idea why OpenFOAM and Paraview don't just use autoconf (./configure && make && make install)? Thanks for your help! |
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February 24, 2013, 16:27
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#4 | ||||
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Retired Super Moderator
Bruno Santos
Join Date: Mar 2009
Location: Lisbon, Portugal
Posts: 10,981
Blog Entries: 45
Rep Power: 128 |
Hi Stephen,
Quote:
Quote:
Code:
ls -l $(which sh) Quote:
Quote:
 .ParaView doesn't use autoconf because it uses CMake, which is multi-platform. But fear not, because OpenFOAM takes this possibility into account, by providing the makeQt script! Although it doesn't do everything on it's own. Adapting from the instructions provided here - http://openfoamwiki.net/index.php/In...M-2.1.1/Ubuntu - here's what you'll need to do: Code:
cd $WM_THIRD_PARTY_DIR
wget "http://www.openfoam.org/mantisbt/file_download.php?file_id=142&type=bug" -O getQt
sed -i -e 's=4\.7\.3=4.6.4=' getQt
sed -i -e 's=ftp://ftp.trolltech.com/qt/source/=http://releases.qt-project.org/qt4/source/=' getQt
./getQt
./makeQt 4.6.4 > mkqt.log 2>&1
cd $WM_THIRD_PARTY_DIR
./makeParaView -qmake ${WM_THIRD_PARTY_DIR}/platforms/$WM_ARCH$WM_COMPILER/qt-4.6.4/bin/qmake \
PARAVIEW_INSTALL_THIRD_PARTY_LIBRARIES:BOOL=ON > mkPV.log 2>&1
cd $FOAM_UTILITIES/postProcessing/graphics/PV3Readers
wmSET $FOAM_SETTINGS
export PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/qt-4.6.4/bin:$PATH
./Allwclean
./Allwmake
edit: by the way, if you want to, you can create a wiki page that provides dedicated instructions for Gentoo: http://openfoamwiki.net/index.php/In...M-2.1.1/Gentoo Best regards, Bruno
__________________
Last edited by wyldckat; February 24, 2013 at 16:28. Reason: see "edit:" |
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February 25, 2013, 15:49
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#5 |
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New Member
Stephen Bosch
Join Date: Feb 2013
Location: Germany
Posts: 22
Rep Power: 13 |
sigh
Hi again, Bruno... I followed your instructions. Building Qt fails with this output: Code:
g++ -c -include .pch/release-shared/QtGui -m64 -pipe -g -pthread -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libdrm -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libpng15 -I/usr/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -O2 -fvisibility=hidden -fvisibility-inlines-hidden -Wall -W -D_REENTRANT -I/usr/include/freetype2 -fPIC -DQT_SHARED -DQT_BUILD_GUI_LIB -DQT_NO_USING_NAMESPACE -DQT_NO_CAST_TO_ASCII -DQT_ASCII_CAST_WARNINGS -DQT3_SUPPORT -DQT_MOC_COMPAT -DQT_HAVE_MMX -DQT_HAVE_3DNOW -DQT_HAVE_SSE -DQT_HAVE_MMXEXT -DQT_HAVE_SSE2 -DQT_NO_OPENTYPE -DQT_NO_STYLE_MAC -DQT_NO_STYLE_WINDOWSVISTA -DQT_NO_STYLE_WINDOWSXP -DQT_NO_STYLE_WINDOWSCE -DQT_NO_STYLE_WINDOWSMOBILE -DQT_NO_STYLE_S60 -DQ_INTERNAL_QAPP_SRC -DQT_NO_DEBUG -DQT_CORE_LIB -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/mkspecs/linux-g++-64 -I/usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui -I../../include/QtCore -I../../include -I../../include/QtGui -I.rcc/release-shared -I/usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/3rdparty/xorg -I/usr/include/freetype2 -I/usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/3rdparty/harfbuzz/src -I/usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/dialogs -I.moc/release-shared -I/usr/X11R6/include -I.uic/release-shared -I. -o .obj/release-shared/qpnghandler.o /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp: In Funktion »void setup_qt(QImage&, png_struct*, png_info*, float)«: /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp:169:39: Fehler: invalid use of incomplete type »struct png_info« /usr/include/libpng15/png.h:730:16: Fehler: forward declaration of »struct png_info« /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp:214:39: Fehler: invalid use of incomplete type »struct png_info« /usr/include/libpng15/png.h:730:16: Fehler: forward declaration of »struct png_info« /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp:223:27: Fehler: invalid use of incomplete type »struct png_info« /usr/include/libpng15/png.h:730:16: Fehler: forward declaration of »struct png_info« /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp:236:37: Fehler: invalid use of incomplete type »struct png_info« /usr/include/libpng15/png.h:730:16: Fehler: forward declaration of »struct png_info« /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp:239:32: Fehler: invalid use of incomplete type »struct png_info« /usr/include/libpng15/png.h:730:16: Fehler: forward declaration of »struct png_info« /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp:241:29: Fehler: invalid use of incomplete type »struct png_info« /usr/include/libpng15/png.h:730:16: Fehler: forward declaration of »struct png_info« /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp:242:29: Fehler: invalid use of incomplete type »struct png_info« /usr/include/libpng15/png.h:730:16: Fehler: forward declaration of »struct png_info« /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp:243:29: Fehler: invalid use of incomplete type »struct png_info« /usr/include/libpng15/png.h:730:16: Fehler: forward declaration of »struct png_info« /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp:247:29: Fehler: invalid use of incomplete type »struct png_info« /usr/include/libpng15/png.h:730:16: Fehler: forward declaration of »struct png_info« /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp:254:28: Fehler: invalid use of incomplete type »struct png_info« /usr/include/libpng15/png.h:730:16: Fehler: forward declaration of »struct png_info« /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp:256:25: Fehler: invalid use of incomplete type »struct png_info« /usr/include/libpng15/png.h:730:16: Fehler: forward declaration of »struct png_info« /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp:257:25: Fehler: invalid use of incomplete type »struct png_info« /usr/include/libpng15/png.h:730:16: Fehler: forward declaration of »struct png_info« /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp:258:25: Fehler: invalid use of incomplete type »struct png_info« /usr/include/libpng15/png.h:730:16: Fehler: forward declaration of »struct png_info« /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp: In Elementfunktion »QImage::Format QPngHandlerPrivate::readImageFormat()«: /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp:534:21: Fehler: invalid use of incomplete type »struct png_info« /usr/include/libpng15/png.h:730:16: Fehler: forward declaration of »struct png_info« /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp:536:25: Fehler: invalid use of incomplete type »struct png_info« /usr/include/libpng15/png.h:730:16: Fehler: forward declaration of »struct png_info« /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp:536:53: Fehler: invalid use of incomplete type »struct png_info« /usr/include/libpng15/png.h:730:16: Fehler: forward declaration of »struct png_info« /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp:538:32: Fehler: invalid use of incomplete type »struct png_info« /usr/include/libpng15/png.h:730:16: Fehler: forward declaration of »struct png_info« /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp:543:28: Fehler: invalid use of incomplete type »struct png_info« /usr/include/libpng15/png.h:730:16: Fehler: forward declaration of »struct png_info« /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp:545:31: Fehler: invalid use of incomplete type »struct png_info« /usr/include/libpng15/png.h:730:16: Fehler: forward declaration of »struct png_info« /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp:548:25: Fehler: invalid use of incomplete type »struct png_info« /usr/include/libpng15/png.h:730:16: Fehler: forward declaration of »struct png_info« /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp:555:25: Fehler: invalid use of incomplete type »struct png_info« /usr/include/libpng15/png.h:730:16: Fehler: forward declaration of »struct png_info« /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp:560:27: Fehler: invalid use of incomplete type »struct png_info« /usr/include/libpng15/png.h:730:16: Fehler: forward declaration of »struct png_info« /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp: In Funktion »void set_text(const QImage&, png_struct*, png_info*, const QString&)«: /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp:651:28: Warnung: veraltete Konvertierung von Zeichenkettenkonstante in »char*« /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp: In Elementfunktion »bool QPNGImageWriter::writeImage(const QImage&, int, const QString&, int, int)«: /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp:744:13: Fehler: invalid use of incomplete type »struct png_info« /usr/include/libpng15/png.h:730:16: Fehler: forward declaration of »struct png_info« /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp:759:13: Fehler: invalid use of incomplete type »struct png_info« /usr/include/libpng15/png.h:730:16: Fehler: forward declaration of »struct png_info« /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp:760:13: Fehler: invalid use of incomplete type »struct png_info« /usr/include/libpng15/png.h:730:16: Fehler: forward declaration of »struct png_info« /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp:761:13: Fehler: invalid use of incomplete type »struct png_info« /usr/include/libpng15/png.h:730:16: Fehler: forward declaration of »struct png_info« /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp:777:21: Fehler: invalid use of incomplete type »struct png_info« /usr/include/libpng15/png.h:730:16: Fehler: forward declaration of »struct png_info« /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp:778:21: Fehler: invalid use of incomplete type »struct png_info« /usr/include/libpng15/png.h:730:16: Fehler: forward declaration of »struct png_info« /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp:779:21: Fehler: invalid use of incomplete type »struct png_info« /usr/include/libpng15/png.h:730:16: Fehler: forward declaration of »struct png_info« /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp:795:17: Fehler: invalid use of incomplete type »struct png_info« /usr/include/libpng15/png.h:730:16: Fehler: forward declaration of »struct png_info« /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp: In Elementfunktion »virtual QVariant QPngHandler::option(QImageIOHandler::ImageOption) const«: /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp:961:33: Fehler: invalid use of incomplete type »struct png_info« /usr/include/libpng15/png.h:730:16: Fehler: forward declaration of »struct png_info« /usr/local/OpenFOAM/ThirdParty-2.1.1/qt-everywhere-opensource-src-4.6.4/src/gui/image/qpnghandler.cpp:961:53: Fehler: invalid use of incomplete type »struct png_info« /usr/include/libpng15/png.h:730:16: Fehler: forward declaration of »struct png_info« make[1]: *** [.obj/release-shared/qpnghandler.o] Fehler 1 make[1]: *** Warte auf noch nicht beendete Prozesse... make[1]: Leaving directory `/usr/local/OpenFOAM/ThirdParty-2.1.1/build/linux64Gcc/qt-everywhere-opensource-src-4.6.4/src/gui' make: *** [sub-gui-make_default-ordered] Fehler 2 real 4m5.409s user 5m54.249s sys 0m28.824s Error building: Qt-4.6.4 Code:
# eix libpng
[I] media-libs/libpng
Available versions:
(1.2) 1.2.50
(0) 1.5.13-r1 ~1.5.14
{{apng neon static-libs}}
Installed versions: 1.5.13-r1(16:42:02 13.10.2012)(-apng -neon -static-libs)
Homepage: http://www.libpng.org/
Description: Portable Network Graphics library
I don't enjoy the thought of having to obtain an entire tree of outdated dependencies in order to make this and the PV3FoamReaders work. Gentoo has a Paraview ebuild for 3.14 and 3.98. Do I even need 3.12? What are the differences between 3.98 and 3.12? And will 3.98 work with OpenFOAM 2.1.1? -Stephen |
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February 25, 2013, 17:12
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#6 |
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New Member
Stephen Bosch
Join Date: Feb 2013
Location: Germany
Posts: 22
Rep Power: 13 |
Sure enough.
From the libpng changelogs: Code:
version 1.5.0 [January 6, 2011] Moved declaration of png_struct into private pngstruct.h and png_info into pnginfo.h |
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February 25, 2013, 18:05
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#7 |
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Retired Super Moderator
Bruno Santos
Join Date: Mar 2009
Location: Lisbon, Portugal
Posts: 10,981
Blog Entries: 45
Rep Power: 128 |
Hi Stephen,
 I haven't come across that particular issue before... but OK, if you want to move up to ParaView 3.14 or 3.98, here's what you can do:
Bruno
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March 2, 2013, 16:43
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#8 |
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New Member
Stephen Bosch
Join Date: Feb 2013
Location: Germany
Posts: 22
Rep Power: 13 |
Okay, I am almost there.
For the benefit of others: Paraview 3.12 wouldn't compile because it requires qt-assistant to be installed. Once I had installed qt-assistant, Paraview compiled successfully. openmpi-1.5.3 is also required. openmpi-1.4.3 will not work, as it lacks the libmpi.so.1 library. Once Paraview is built, you need to make sure the dynamic libraries are properly linked. I put this in a custom env.d file [/etc/env.d/91paraview]: Code:
LDPATH=/usr/local/OpenFOAM/ThirdParty-2.1.1/platforms/linux64Gcc/paraview-3.12.0/lib/paraview-3.12/ I was unable to find any file or script named wmSET, so I have no idea what tarball or package it comes from. Running paraFoam as an unprivileged user still results in an error: Code:
$ paraFoam created temporary 'cavity.OpenFOAM' /usr/local/OpenFOAM/OpenFOAM-2.1.1/bin/paraFoam: line 260: paraview: command not found |
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March 2, 2013, 17:00
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#9 |
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New Member
Stephen Bosch
Join Date: Feb 2013
Location: Germany
Posts: 22
Rep Power: 13 |
It was a path problem. Temporarily, I did
Code:
PATH=$PATH:/usr/local/OpenFOAM/ThirdParty-2.1.1/build/linux64Gcc/paraview-3.12.0/bin/ paraview starts, but the Render View window is empty. I don't know what is wrong. I will try working through a few other tutorials to see if they now work as expected. With so many different paths and environment scripts, I have completely lost the thread. Cleaning this up and figuring out what the real steps are to make a clean, working source install of OpenFOAM 2.1.1 and Paraview 3.12 is going to be a challenge. I prefer to make a clean, system-wide install as root so that the resulting installation works for an unprivileged user, but the instructions pay only limited attention to this installation variant, even though it's the standard procedure in Linux. Considering how much effort the installation is, I'd only want to do this once and have it work for everybody who uses the machine. |
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March 2, 2013, 19:58
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#10 | |||||||
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Retired Super Moderator
Bruno Santos
Join Date: Mar 2009
Location: Lisbon, Portugal
Posts: 10,981
Blog Entries: 45
Rep Power: 128 |
Hi Stephen,
Many thanks for sharing you findings! I personally haven't looked into Gentoo because of what I've read in the past, namely that we have to build everything from source ourselves... but it's 2013, I should give it a go one of these days... To answer your comments: Quote:
Quote:
Quote:
Code:
$ alias wmSET alias wmSET='. $WM_PROJECT_DIR/etc/bashrc' Quote:
Quote:
.Quote:
Quote:
 Another reason for a personal installation is because some users will sooner or later want/need to do some heavy debugging, looking for errors in source code that they make, or because they are using a solver that has very little documentation. It's a lot easier to build and hack into the code when root permissions aren't required. Now, as I mentioned above, to help solve some of the problems you're still having:
Last but not least, I forgot to mention before that the instructions at openfoamwiki.net are not official and are still a work in progress. And for reference, the old (unofficial) installation page was... well, see for yourself: http://openfoamwiki.net/index.php/In...hic_version%29 Best regards, Bruno
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March 3, 2013, 17:30
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#11 |
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Retired Super Moderator
Bruno Santos
Join Date: Mar 2009
Location: Lisbon, Portugal
Posts: 10,981
Blog Entries: 45
Rep Power: 128 |
Greetings Stephen,
I started to play a bit with Gentoo today... and am still building Gnome, which is far worse than OpenFOAM, time-wise  Anyway, I remembered just now to check how emerge packages were on the subject of OpenFOAM and I found this: http://packages.gentoo.org/package/sci-libs/openfoam - it's recent, but looks like it exists before your first post edit: based on my findings and very brief tests, I've created the page I mentioned before: http://openfoamwiki.net/index.php/In...M-2.1.1/Gentoo - Stephen, if you can and/or wish, feel free to improve upon those instructions! Best regards, Bruno
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Last edited by wyldckat; March 3, 2013 at 18:09. Reason: see "edit:" |
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April 11, 2013, 09:09
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Got OpenFOAM 2.2 working with Paraview 3.98
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#12 |
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New Member
Stephen Bosch
Join Date: Feb 2013
Location: Germany
Posts: 22
Rep Power: 13 |
Ok, two things:
1. the Gentoo OpenFOAM ebuild has been bumped to 2.2. All of the OpenFOAM ebuilds create the directory structure incorrectly. I had to create symlinks to get things to work. There is a bug filed in Gentoo bugzilla, but I don't know how much time the maintainer has to work on things. Anyway, after creating the symlinks and adding Code:
alias startOF22='source /usr/lib64/OpenFOAM/OpenFOAM-2.2.0/etc/bashrc' alias paraFoam='paraFoam -builtin' 2. I have contributed a new ebuild to the Gentoo science overlay for gmsh-2.7.0. I still have remove everything and do the complete installation procedure again from scratch before I can update the instructions in the wiki. Thanks for your assistance so far. OpenFOAM seems almost in a usable state on Gentoo. |
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| Tags |
| compile, error, gentoo, linux, paraview |
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