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Postprocessing the simulation output VTU file with Python

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Old   February 12, 2022, 12:59
Default Postprocessing the simulation output VTU file with Python
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J Powell
Join Date: Feb 2022
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Hello, I want to explore more in my VTU file (attached) besides using Paraview, I try to write a Python script (attached) to read my VTU file, like store all the results to lists, so I can do some analysis.

I have tried both two packages from this link,

https://stackoverflow.com/questions/...w-vtk-vtu-file

and they don’t work for me. Anyone can please provide a good package?

VTU looks like (too big to upload)

<?xml version='1.0'?>
<VTKFile type='UnstructuredGrid' version='0.1' byte_order='LittleEndian' compressor='vtkZLibDataCompressor'>
<UnstructuredGrid>
<Piece NumberOfPoints='1368' NumberOfCells='342'>
<PointData>
</PointData>
<CellData Scalars='area failure mode length opening 0 opening 1 opening 2 property id slip 0 slip 1 slip 2 '>
<DataArray Name='area' type='Float64' NumberOfComponents='1' format='appended' offset='0'></DataArray>
<DataArray Name='failure mode' type='Float32' NumberOfComponents='1' format='appended' offset='200'></DataArray>
<DataArray Name='length' type='Float64' NumberOfComponents='1' format='appended' offset='256'></DataArray>
<DataArray Name='opening 0' type='Float64' NumberOfComponents='1' format='appended' offset='448'></DataArray>
<DataArray Name='opening 1' type='Float64' NumberOfComponents='1' format='appended' offset='636'></DataArray>
<DataArray Name='opening 2' type='Float64' NumberOfComponents='1' format='appended' offset='824'></DataArray>
<DataArray Name='property id' type='Int32' NumberOfComponents='1' format='appended' offset='1020'></DataArray>
<DataArray Name='slip 0' type='Float64' NumberOfComponents='1' format='appended' offset='1076'></DataArray>
<DataArray Name='slip 1' type='Float64' NumberOfComponents='1' format='appended' offset='1272'></DataArray>
<DataArray Name='slip 2' type='Float64' NumberOfComponents='1' format='appended' offset='1468'></DataArray>
</CellData>
<Points>
<DataArray type='Float64' NumberOfComponents='3' format='appended' offset='1660'></DataArray>
</Points>
<Cells>
<DataArray Name='connectivity' type='Int32' NumberOfComponents='1' format='appended' offset='10776'></DataArray>
<DataArray Name='offsets' type='Int32' NumberOfComponents='1' format='appended' offset='13384'></DataArray>
<DataArray Name='types' type='UInt8' NumberOfComponents='1' format='appended' offset='14032'></DataArray>
</Cells>
</Piece>
</UnstructuredGrid>
<AppendedData encoding='base64'>
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</AppendedData>
</VTKFile>

Last edited by miraboreasu; February 12, 2022 at 13:00. Reason: python
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Old   February 22, 2022, 06:36
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I have found this package named Vedo to be very good for VTK operations -- not sure how it works for VTU, but worth trying.
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Old   June 24, 2022, 18:18
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You can also checkout VTUinterface for I/O. It uses the standard VTK wrapper for Python, but is simpler to use and also has some added functionalities.
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Old   May 9, 2024, 01:17
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Hello,

I'm currently facing the same issue. I have tried using meshio, but gives an error since the data in the vtu file is "Appended". I get the following message:

Unknown data format 'append'.
Error: Couldn't read file <file-name>.vtu as vtu

Also, I was not able to make it work with xml.

Any guidance?
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Old   May 13, 2024, 06:49
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The data format is called 'appended' and not 'append'. So this is very likely a typo.
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