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Parallel error when doing M6 optimization in Tutorial 9 |
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December 18, 2013, 05:55 |
Parallel error when doing M6 optimization in Tutorial 9
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#1 |
New Member
feeling
Join Date: Jan 2013
Posts: 21
Rep Power: 13 |
I use Ubuntu system. My conditions are:
1. install python, numpy, scipy, metis, mpich2,such as sudo apt-get install mpich2 2. I set the SU2_RUN= /home/username/SU2v2.0/trunk/SU2Py 3. I type "python ./build_SU2.py -o redhat", so the executable files (SU2_CFD, SU2_GPC etc.) are generated in SU2Py directory. 4. Move the inv_ONERAM6.cfg and mesh_ONERAM6_inv.su2 into SU2Py directory 5. Type python shape_optimization.py -f inv_ONERAM6.cfg -p 4 At the beginning, the preparing process goes well, I can see the generation of Domain 1, Domain 2,Domain 3,Domain 4, but then I obtain some errors: SU2 Suite (Domain Decomposition Code) | ------------------------------------------------------------------------- ------------------------ Physical case definition ----------------------- Input mesh file name: mesh_ONERAM6_inv.su2 -------------------------- Output information --------------------------- Don't visualize the partitions. ------------------- Config file boundary information -------------------- Euler wall boundary marker(s): UPPER_SIDE, LOWER_SIDE, TIP. Far-field boundary marker(s): XNORMAL_FACES, ZNORMAL_FACES, YNORMAL_FACE. Symmetry plane boundary marker(s): SYMMETRY_FACE. ---------------------- Read grid file information ----------------------- Three dimensional problem. 582752 interior elements. 108396 points. 7 surface markers. 17284 boundary elements in index 0 (Marker = LOWER_SIDE). 2597 boundary elements in index 1 (Marker = TIP). 16573 boundary elements in index 2 (Marker = UPPER_SIDE). 173 boundary elements in index 3 (Marker = XNORMAL_FACES). 142 boundary elements in index 4 (Marker = ZNORMAL_FACES). 153 boundary elements in index 5 (Marker = YNORMAL_FACE). 1834 boundary elements in index 6 (Marker = SYMMETRY_FACE). ----------------------- Preprocessing computations ---------------------- Identifying vertices. --------------------------- Read FFD information ------------------------ 1 Free Form Deformation (FFD) chunks. 1 Free Form Deformation (FFD) nested levels. FFD box tag: 0. FFD box level: 0. Degrees: 5, 4, 1. Number of parent boxes: 0. Number of child boxes: 0. Corner points: 8. Control points: 0. Surface points: 0. ---------------------- Performing mesh partitioning --------------------- Finished partitioning using METIS 4.0.3. (8307 edge cuts). ----------------------------- Write mesh files -------------------------- Domain 1: 28156 points (958 ghost points). Domain 2: 28372 points (1302 ghost points). Domain 3: 29097 points (1497 ghost points). Domain 4: 27665 points (1137 ghost points). ------------------------- Exit Success (SU2_DDC) ------------------------ mpiexec_jiafeilin-desktop: cannot connect to local mpd (/tmp/mpd2.console_jiafeilin); possible causes: 1. no mpd is running on this host 2. an mpd is running but was started without a "console" (-n option) In case 1, you can start an mpd on this host with: mpd & and you will be able to run jobs just on this host. For more details on starting mpds on a set of hosts, see the MPICH2 Installation Guide. Merging grid files (.su2)... 0%Traceback (most recent call last): File "/home/jiafeilin/SU2v2.0/trunk/SU2Py/merge_grid_su2.py", line 53, in <module> input_file = open("%s_%s.%s" % (mesh_out_filename.split(".")[0], domain+1, mesh_out_filename.split(".")[1])) IOError: [Errno 2] No such file or directory: 'mesh_opt_MDC_inv_ONERAM6_1.su2' mpiexec_jiafeilin-desktop: cannot connect to local mpd (/tmp/mpd2.console_jiafeilin); possible causes: 1. no mpd is running on this host 2. an mpd is running but was started without a "console" (-n option) In case 1, you can start an mpd on this host with: mpd & and you will be able to run jobs just on this host. For more details on starting mpds on a set of hosts, see the MPICH2 Installation Guide. Traceback (most recent call last): File "/home/jiafeilin/SU2v2.0/trunk/SU2Py/merge_solution.py", line 84, in <module> if math_problem == "DIRECT": input_file = open("%s_%s.plt" % (volume_flow_filename, domain+1)) IOError: [Errno 2] No such file or directory: 'flow_1.plt' NIT FC OBJFUN GNORM Traceback (most recent call last): File "shape_optimization.py", line 676, in <module> acc=1e-12, iprint=2, full_output=1, epsilon=1.0e-10) File "/usr/lib/python2.6/dist-packages/scipy/optimize/slsqp.py", line 268, in fmin_slsqp fx = func(x) File "/usr/lib/python2.6/dist-packages/scipy/optimize/optimize.py", line 97, in function_wrapper return function(x, *args) File "shape_optimization.py", line 255, in f rename_data() File "shape_optimization.py", line 610, in rename_data os.rename(output_names[key][0],output_names[key][1]) OSError: [Errno 2] No such file or directory |
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January 11, 2014, 23:18 |
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#2 |
Super Moderator
Francisco Palacios
Join Date: Jan 2013
Location: Long Beach, CA
Posts: 404
Rep Power: 15 |
Could you please try again with the latest version of the code in the GitHub repository ( https://github.com/su2code/SU2 ) ?
Thanks! Francisco |
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January 12, 2014, 07:01 |
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#3 | |
New Member
feeling
Join Date: Jan 2013
Posts: 21
Rep Power: 13 |
Quote:
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