[Haowang]

Hi everyone,
I am trying to build Raven master (V5.0) with AD support using preconfigure.py. Since the HPC system can't access the internet, I have download and decompress the codi and adjointmpi packages before configuration.
My command is this:
export CXXFLAGS="-O3 -Wall" && ./preconfigure.py --enable-autodiff --enable-mpi --prefix=/vol6/home/zhhan/wh/SU25SOURCE
And received this error:
Checking the status of submodules
================================================== ===================
.gitmodules not found, using fall-back method...
Found correct version of CoDiPack in externals/codi.
Found correct version of AdjointMPI in externals/adjointmpi.

Configuring and building AdjointMPI in externals/adjointmpi
================================================== ===================
Command: ./configure --prefix=/vol6/home/zhhan/wh/SU25SOURCE/externals/adjointmpi && make clean && make

There was an error while running command './configure --prefix=/vol6/home/zhhan/wh/SU25SOURCE/externals/adjointmpi && make clean && make'.
=== Error Log ===
/bin/sh: ./configure: No such file or directory

Now I have solved this problem by copy these file from my own PC which has built SU2 using AD build. But the cluster reported other errors:

CXX ../src/libSU2_AD_a-config_structure.o
CXX ../src/libSU2_AD_a-dual_grid_structure.o
CXX ../src/libSU2_AD_a-geometry_structure.o
CXX ../src/libSU2_AD_a-grid_adaptation_structure.o
CXX ../src/libSU2_AD_a-grid_movement_structure.o
CXX ../src/libSU2_AD_a-linear_solvers_structure.o
CXX ../src/libSU2_AD_a-primal_grid_structure.o
CXX ../src/libSU2_AD_a-vector_structure.o
CXX ../src/libSU2_AD_a-matrix_structure.o
CXX ../src/libSU2_AD_a-mpi_structure.o
CXX ../src/libSU2_AD_a-linear_solvers_structure_b.o
on or static data member
alueType>{
^

here after previous syntax error
};
^

../../../externals/codi/include/tapes/forwardEvaluation.hpp(244): error: expected a ";"
};
^

../../../externals/codi/include/tapes/forwardEvaluation.hpp(245): error: expected a declaration
}
^

on or static data member
alueType>{
^

here after previous syntax error
};
^

../../../externals/codi/include/tapes/forwardEvaluation.hpp(244): error: expected a ";"
};
^

../../../externals/codi/include/tapes/forwardEvaluation.hpp(245): error: expected a declaration
}
^

on or static data member
alueType>{
^

here after previous syntax error
};
^

../../../externals/codi/include/tapes/forwardEvaluation.hpp(244): error: expected a ";"
};
^

../../../externals/codi/include/tapes/forwardEvaluation.hpp(245): error: expected a declaration
}
^

on or static data member
alueType>{
^

here after previous syntax error
};
^

../../../externals/codi/include/tapes/forwardEvaluation.hpp(244): error: expected a ";"
};
^

../../../externals/codi/include/tapes/forwardEvaluation.hpp(245): error: expected a declaration
}
^

on or static data member
alueType>{
^

here after previous syntax error
};
^

../../../externals/codi/include/tapes/forwardEvaluation.hpp(244): error: expected a ";"
};
^

../../../externals/codi/include/tapes/forwardEvaluation.hpp(245): error: expected a declaration
}
^

/usr/include/c++/4.4.7/iomanip(92): error: identifier "_Setiosflags" is undefined
inline _Setiosflags
^

ame
setiosflags(ios_base::fmtflags __mask)
^

ly
inline _Setiosflags
^

/usr/include/c++/4.4.7/iomanip(93): error: expected a ")"
......
The complete log file is in the attachment.
Thank you!

[talbring]

Hi Hao,

with the last major release, the minimum compiler versions for the AD build are now GCC >= v4.7, Clang >= v3.0 or Intel C++ >= v12.0 because we need C++11 features. It looks like you are using GCC 4.4.7 which is not supported anymore ...

Tim

[Haowang]

Originally Posted by talbring

Hi Hao,

with the last major release, the minimum compiler versions for the AD build are now GCC >= v4.7, Clang >= v3.0 or Intel C++ >= v12.0 because we need C++11 features. It looks like you are using GCC 4.4.7 which is not supported anymore ...

Tim

Thanks Tim! I have noticed that requirement. However i was actually using intel2013-mpi3.0.4 to build SU2-5.0.0. I have no idea why it used the lib from gcc4.4. I guess it is because the wrong LD_LIBRARY_PATH. Here is my LD_LIBRARY_PATH:
/vol6/software/python-2.7.11/lib:/vol6/software/mpi/mpi-intel2013/lib:

The attachment is the config.log in the SU2_AD folder. I hope someone couldhelp me to find some clue. By the way, i've build the SU2 in parallel build model successfully on the same HPC system.
Thanks again!

[Haowang]

Originally Posted by Haowang

Thanks Tim! I have noticed that requirement. However i was actually using intel2013-mpi3.0.4 to build SU2-5.0.0. I have no idea why it used the lib from gcc4.4. I guess it is because the wrong LD_LIBRARY_PATH. Here is my LD_LIBRARY_PATH:
/vol6/software/python-2.7.11/lib:/vol6/software/mpi/mpi-intel2013/lib:

The attachment is the config.log in the SU2_AD folder. I hope someone couldhelp me to find some clue. By the way, i've build the SU2 in parallel build model successfully on the same HPC system.
Thanks again!

I have find out the reason. It is indeed the problem of the version of the GCC. I upgraded the GCC compiler and mpich2, then i build SU2 in AD Build successfully.