Hi,

I am trying to run prosurf in batch mode because our linux cluster doesnt allow to run a process intractively for more than 20mins. I tried running prosurf using the following command :

prosurf batch < prosurf.inp > prosurf.log

But still the process get killed after 20mins saying that process cannot run for more than 20mins in intractive mode.

I am running star on batch mode on the same cluster with the following command

>star batch
:qsub batch.sh

And this process runs fine without getting killed in 20mins Any suggestions are welcome

The prosurf job is not submitted to LSF, so it is treated like an interactiv job.