CFD Online Logo CFD Online URL
www.cfd-online.com
[Sponsors]
Home > Forums > Visualization & Post-Processing Software > ParaView

[OpenFOAM] Native ParaView Reader Bugs

Register Blogs Community New Posts Updated Threads Search

Like Tree3Likes

Reply
 
LinkBack Thread Tools Search this Thread Display Modes
Old   August 31, 2009, 13:08
Default
  #181
Senior Member
 
Philippose Rajan
Join Date: Mar 2009
Location: Germany
Posts: 552
Rep Power: 25
philippose will become famous soon enough
Hello BastiL,

Good Evening to you!!

That almost looks like a problem with your "readers.xml" file... are you sure you have modified that file as per the instructions given by Takuya? If I am not mistaken, the original version of Paraview still contains the old OpenFOAM reader by Terry Jordan.... and it must be conflicting with the version from Takuya....

Have a nice day...!

Philippose
philippose is offline   Reply With Quote

Old   August 31, 2009, 15:59
Default
  #182
Senior Member
 
BastiL
Join Date: Mar 2009
Posts: 530
Rep Power: 20
bastil is on a distinguished road
Quote:
Originally Posted by philippose View Post
That almost looks like a problem with your "readers.xml" file... are you sure you have modified that file as per the instructions given by Takuya?
Well, of course it is conflicting. I followed the instructions given here:

http://openfoamwiki.net/index.php/Ti...r#Installation

I can not find anything about a "readers.xml"-File in there - except the hint that it does not need to be patched anymore...?

Regards, BastiL
bastil is offline   Reply With Quote

Old   August 31, 2009, 20:33
Default
  #183
Super Moderator
 
Takuya OSHIMA
Join Date: Mar 2009
Location: Niigata City, Japan
Posts: 518
Blog Entries: 1
Rep Power: 20
7islands is on a distinguished road
Hi BastiL,

The contents of the readers.xml should be included in the parallel plugin (libPOpenFOAMReaderSMPlugin.so) thus perhaps the plugin was not loaded to ParaView correctly. If you don't mind building ParaView again try another "build everything as builtin" version
PHP Code:
svn co https://of-interfaces.svn.sourceforge.net/svnroot/of-interfaces/branches/vtkPOpenFOAMReader-r23-VTKcontrib 
(the installation instruction are in the included README and INSTALLs). This also has some bugs found in the 20081005 version fixed.

Takuya
7islands is offline   Reply With Quote

Old   September 1, 2009, 04:11
Default
  #184
Senior Member
 
BastiL
Join Date: Mar 2009
Posts: 530
Rep Power: 20
bastil is on a distinguished road
Quote:
Originally Posted by 7islands View Post
If you don't mind building ParaView again try another "build everything as builtin" version
PHP Code:
svn co https://of-interfaces.svn.sourceforge.net/svnroot/of-interfaces/branches/vtkPOpenFOAMReader-r23-VTKcontrib 
(the installation instruction are in the included README and INSTALLs). This also has some bugs found in the 20081005 version fixed.
Takuya

Ok fine I will try. Do I have to rebuild all of paraview? (make clean, make)? Or can I rebuild just modified as with OpenFOAM? If yes, how? Thanks.

BastiL
bastil is offline   Reply With Quote

Old   September 1, 2009, 11:48
Default
  #185
Super Moderator
 
Takuya OSHIMA
Join Date: Mar 2009
Location: Niigata City, Japan
Posts: 518
Blog Entries: 1
Rep Power: 20
7islands is on a distinguished road
A safe bet would be to start over from the vanilla 3.6.1 source and re-run CMake from a fresh build directory (It may not be necessary to go through all the steps in reality but that would help pinpointing the causes if you had more problems).

Takuya
7islands is offline   Reply With Quote

Old   September 1, 2009, 12:53
Default
  #186
Senior Member
 
BastiL
Join Date: Mar 2009
Posts: 530
Rep Power: 20
bastil is on a distinguished road
Takuya,

thanks this works fine now.
bastil is offline   Reply With Quote

Old   November 24, 2009, 13:44
Default parafoam and pvFoam freezes laptop?
  #187
Member
 
Pablo Caron
Join Date: Nov 2009
Location: Buenos Aires, Argentina
Posts: 75
Rep Power: 17
pcaron is on a distinguished road
Hello everybody. Regards from Argentina!

I've used OpenFOAM since January 09. I've ran OF in Ubuntu 8.04, Kubuntu 8.04 without problems. Always desktop machines.

By June, I bought a laptop: HP 550, Intel Core 2 Duo 1.8GHz, RAM:4Gb,Video: Intel GME965. I installed an Ubuntu 9.04 64bit, with several known problems with the Intel video driver. So I've waited until Ubuntu 9.10 64bit.

At the beginning everything looks fine. But sometimes the system hanged up. I thought the problem was related again with the video driver (almost the last version available) so I installed Opensuse 11.2 64bit last weekend (with the last video driver available). All partitions using ext4.

Today my system hanged up again. The difference with previous times is: I know what I have to do to hang up the system.

I'll explain the details:
Objetive: Read an OpenFOAM mesh. Just the mesh, no results. Apply opacity to the surface.

Option 1: Read the mesh using paraFoam. After read the mesh, change to Surface+Solid Color. Apply opacity=0.5. After a few seconds the system freezes. Then the only option is to force shutdown

Option 2: Read the mesh using pvFoam. Same results as Option 1.

Option 3: export the mesh with foamToVTK and read using paraview. Everything works fine, just a little slow.

I'm really confused. Could it be a problem with the reader?

I'll appreciate any help.

Best regards

Pablo
pcaron is offline   Reply With Quote

Old   November 25, 2009, 02:45
Default
  #188
Super Moderator
 
Takuya OSHIMA
Join Date: Mar 2009
Location: Niigata City, Japan
Posts: 518
Blog Entries: 1
Rep Power: 20
7islands is on a distinguished road
Hi Pablo,
Sorry but have no idea. If you can reproduce with one of the datasets that is included in ParaViewData3.6.zip, you might ask help at the ParaView list.

Takuya
7islands is offline   Reply With Quote

Old   November 25, 2009, 09:36
Default Thanks
  #189
Member
 
Pablo Caron
Join Date: Nov 2009
Location: Buenos Aires, Argentina
Posts: 75
Rep Power: 17
pcaron is on a distinguished road
Hi Takuya!

Thank you for your quickly response. I'll try to reproduce the problem with the paraview data.

Have a nice day!

Pablo
pcaron is offline   Reply With Quote

Old   January 23, 2010, 11:45
Default
  #190
Super Moderator
 
Takuya OSHIMA
Join Date: Mar 2009
Location: Niigata City, Japan
Posts: 518
Blog Entries: 1
Rep Power: 20
7islands is on a distinguished road
Hi,

A version of the reader has been in ParaView 3.7-cvs and VTK 5.5-cvs since 9 Jan 2010. As far as I understand, the commit is still considered tentative as the Kitware developers are setting up a test soon and the reader still has to pass it before everything settles.

The version is based on a previous release of r64-20081005 since I had to do some specific works of addressing compilation issues on some ParaView/VTK dashboard platforms. The most notable differences from the current release of r173-20090920 are
  • The version supports dictionary syntaxes up to OpenFOAM 1.5 (no support for regular expressions).
  • The reader does not have the custom Qt UI (the Reload and Watch buttons) since the developer used a GPLed version of Qt 4.3 at that time.
However anyhow, the reader has all the basic features including parallelization and is expected to work at least better than "chose OpenFOAM file format from the list of the readers but then ParaView just crashed" which we were long used to. Please feel free to give it a try.

Have a nice weekend,
Takuya
7islands is offline   Reply With Quote

Old   February 11, 2010, 08:48
Default Thanks and "view patch names"
  #191
Member
 
Pablo Caron
Join Date: Nov 2009
Location: Buenos Aires, Argentina
Posts: 75
Rep Power: 17
pcaron is on a distinguished road
Hi Takuya!

I'll give it a try!

BTW, is it posible to add the "view patch names" option to the reader? When using the standard reader I can see this option. It's very useful to check the mesh.

Regards

Pablo
pcaron is offline   Reply With Quote

Old   February 11, 2010, 09:39
Default
  #192
Super Moderator
 
Takuya OSHIMA
Join Date: Mar 2009
Location: Niigata City, Japan
Posts: 518
Blog Entries: 1
Rep Power: 20
7islands is on a distinguished road
Hi Pablo,

I admit its usefulness, but sorry, currently I have no plan to implement the option because
  • it requires either quite a tricky implementation which makes the reader incompatible with the client/server mode, or an exceptionally tight integration between the client side and the server side codes, and
  • supporting decomposed cases requires too complicated works.
Takuya
7islands is offline   Reply With Quote

Old   February 11, 2010, 10:30
Default
  #193
Member
 
Pablo Caron
Join Date: Nov 2009
Location: Buenos Aires, Argentina
Posts: 75
Rep Power: 17
pcaron is on a distinguished road
Takuya,

Thanks for your quickly response. I understand the problem.

I'll tell you if the problem persist in my laptop.

Regards.

Pablo
pcaron is offline   Reply With Quote

Old   February 16, 2010, 06:00
Default Building and installing the plugins problem
  #194
Senior Member
 
Cean
Join Date: Feb 2010
Posts: 128
Rep Power: 16
shirazbj is on a distinguished road
Hi,


I am trying to build the r173-20090920 Reader on Ubuntu 8.1 & 9.04 for paraview3.6.2. But has problem:

Follow Step 4.2.2 Building and installing the plugins

When ccmake <the top directory of the reader source tree>

setting ParaView_DIR = <the directory where ParaView was built>


I got an error saying ParaView_DIR can't be found. It asks me to locate
a file named ParaViewConfig.cmake. But I can only found one named
ParaViewConfig.cmake.in under the folder ParaView3 extracted from the source.

Where the this file?

Does this Reader need a working paraview to build?

Thanks

Cean
shirazbj is offline   Reply With Quote

Old   February 16, 2010, 06:32
Default
  #195
Super Moderator
 
Takuya OSHIMA
Join Date: Mar 2009
Location: Niigata City, Japan
Posts: 518
Blog Entries: 1
Rep Power: 20
7islands is on a distinguished road
Hi Cean,

ParaViewConfig.cmake should be in the top directory of the build tree. You need to do a full build of ParaView 3.6.2 first.

Takuya
7islands is offline   Reply With Quote

Old   February 24, 2010, 17:10
Default
  #196
Senior Member
 
Sandeep Menon
Join Date: Mar 2009
Location: Amherst, MA
Posts: 403
Rep Power: 25
deepsterblue will become famous soon enough
Takuya,
Do you think you could add support for surfaceFields on your reader? I'd like to be able to visualize them like say, a pointField, or something similar. I'm hoping that this isn't too much of a problem, because boundaries for volFields are already displayed correctly, and they lie on faces.

Thanks
__________________
Sandeep Menon
University of Massachusetts Amherst
https://github.com/smenon
deepsterblue is offline   Reply With Quote

Old   February 25, 2010, 03:57
Default
  #197
Senior Member
 
Mark Olesen
Join Date: Mar 2009
Location: https://olesenm.github.io/
Posts: 1,715
Rep Power: 40
olesen has a spectacular aura aboutolesen has a spectacular aura about
Quote:
Originally Posted by deepsterblue View Post
Takuya,
Do you think you could add support for surfaceFields on your reader? I'd like to be able to visualize them like say, a pointField, or something similar. I'm hoping that this isn't too much of a problem, because boundaries for volFields are already displayed correctly, and they lie on faces.
From what I know, supporting surface fields would require a significant rewrite of the reader.

The only way I can see representing a surface field as a point field would be to create new points corresponding to the face centroids - but this would be a reader feature entirely.
Simply extending the current volFields handling to include surface fields isn't really an option either. The boundaries faces are indeed treated as independent geometric entities in VTK and have their own values, but the internal faces do not exist independently.
If internal faces were to be added as independent entities, I would suspect that the best would be a switch in the GUI to handle that. In one position, the reader would handle surface fields, in the other position it would handle volume fields - you would then need two reader instances to display everything.
olesen is offline   Reply With Quote

Old   February 25, 2010, 05:00
Default
  #198
Super Moderator
 
Takuya OSHIMA
Join Date: Mar 2009
Location: Niigata City, Japan
Posts: 518
Blog Entries: 1
Rep Power: 20
7islands is on a distinguished road
Hi Sandeep, Mark,

Both you two are quite right -- from pure technical standpoint, adding support for surfaceField should not be that difficult. The problems are what entity we would create in order to represent the surfaceField mesh and fields and what amount of work is required in order to implement the feature, because VTK does not have its own support for face fields. I wonder if creating a point field of face centroids is enough? Or should we create a polygonal mesh that contains all faces? (The latter is what I did in gmshFoam by the way)

Takuya
7islands is offline   Reply With Quote

Old   February 25, 2010, 05:36
Default
  #199
Senior Member
 
Mark Olesen
Join Date: Mar 2009
Location: https://olesenm.github.io/
Posts: 1,715
Rep Power: 40
olesen has a spectacular aura aboutolesen has a spectacular aura about
Quote:
Originally Posted by 7islands View Post
Or should we create a polygonal mesh that contains all faces? (The latter is what I did in gmshFoam by the way)
That is probably the best solution. If you want to avoid having two reader instances, it'd be reasonable easy to use a GUI switch to enable surfaceFields and then place the resulting vtkPolyData on a separate output port.
olesen is offline   Reply With Quote

Old   February 25, 2010, 07:04
Default
  #200
Super Moderator
 
Takuya OSHIMA
Join Date: Mar 2009
Location: Niigata City, Japan
Posts: 518
Blog Entries: 1
Rep Power: 20
7islands is on a distinguished road
Here is what it looks like in the case of gmshFoam, and would look like (sort of) in ParaView when a clip of a polygonal surfaceField mesh is created.

(Surface with edges, emulated by Gmsh with additional element outlines)
surfaceWithEdges.png

(Wireframe, emulated by Gmsh with Element boudary mode Dimension - 1)
wireframe.jpg

Note that you will typically see different colors depending on the direction of the faces since the face fluxes quite depends on the direction of the flow. Are these representations look useful?

Takuya
7islands is offline   Reply With Quote

Reply


Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are Off
Pingbacks are On
Refbacks are On


Similar Threads
Thread Thread Starter Forum Replies Last Post
[OpenFOAM] Extract Block with paraview native reader kandelabr ParaView 4 August 30, 2021 03:28
[OpenFOAM] Decomposed multiregion cases in Paraview with native reader Yann ParaView 2 January 16, 2019 06:48
Updated native OpenFOAM reader for ParaView 5.3 opencfd OpenFOAM Announcements from ESI-OpenCFD 4 July 13, 2017 11:14
[OpenFOAM] Native VisIt Reader Bugs tj22 ParaView 8 November 8, 2013 05:21
[OpenFOAM] Paraview Windows VTK Reader trex930 ParaView 0 November 3, 2010 20:31


All times are GMT -4. The time now is 13:13.