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December 21, 2015, 07:54 |
Problem to run simpleFoam using qsub?
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#1 |
Senior Member
M. Montero
Join Date: Mar 2009
Location: Madrid
Posts: 155
Rep Power: 17 |
I am having problems to run a simulation using qsub.
It works ok not using qsub: Using mpirun --hostfile machines -np 504 simpleFoam -parallel > log & But using: qsub -cwd lanza.sh With lanza.sh: #$ -j y #$ -S /bin/bash #$ -pe ompi 504 #$ -q lenovo.q #$ -m be #$ -M mail@mail.com . /opt/OpenFOAM/OpenFOAM-2.1.1/etc/bashrc echo "Start" mpirun -np 504 simpleFoam -parallel echo "End Parallel Run" I obtain these files and the run does not progress: lanza.sh.po38 Code:
-catch_rsh /opt/sge/default/spool/nodo01/active_jobs/38.1/pe_hostfile nodo01 nodo01 nodo01 nodo01 nodo01 nodo01 nodo01 nodo01 nodo01 ....... Code:
Start Host key verification failed. Host key verification failed. Host key verification failed. Host key verification failed. Host key verification failed. Host key verification failed. Host key verification failed. Host key verification failed. Host key verification failed. Host key verification failed. Host key verification failed. Host key verification failed. Host key verification failed. Host key verification failed. Host key verification failed. Host key verification failed. Host key verification failed. -------------------------------------------------------------------------- A daemon (pid 8509) died unexpectedly with status 255 while attempting to launch so we are aborting. There may be more information reported by the environment (see above). This may be because the daemon was unable to find all the needed shared libraries on the remote node. You may set your LD_LIBRARY_PATH to have the location of the shared libraries on the remote nodes and this will automatically be forwarded to the remote nodes. -------------------------------------------------------------------------- -------------------------------------------------------------------------- mpirun noticed that the job aborted, but has no info as to the process that caused that situation. -------------------------------------------------------------------------- End Parallel Run |
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December 22, 2015, 13:53 |
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#2 |
Senior Member
Joachim Herb
Join Date: Sep 2010
Posts: 650
Rep Power: 22 |
can you login into all nodes using ssh without giving a password?
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