CFD Online Logo CFD Online URL
www.cfd-online.com
[Sponsors]
Home > Forums > Software User Forums > OpenFOAM

Problem to run simpleFoam using qsub?

Register Blogs Community New Posts Updated Threads Search

Reply
 
LinkBack Thread Tools Search this Thread Display Modes
Old   December 21, 2015, 07:54
Default Problem to run simpleFoam using qsub?
  #1
Senior Member
 
M. Montero
Join Date: Mar 2009
Location: Madrid
Posts: 155
Rep Power: 17
be_inspired is on a distinguished road
I am having problems to run a simulation using qsub.

It works ok not using qsub:
Using mpirun --hostfile machines -np 504 simpleFoam -parallel > log &

But using:
qsub -cwd lanza.sh

With lanza.sh:
#$ -j y
#$ -S /bin/bash
#$ -pe ompi 504
#$ -q lenovo.q
#$ -m be
#$ -M mail@mail.com
. /opt/OpenFOAM/OpenFOAM-2.1.1/etc/bashrc


echo "Start"
mpirun -np 504 simpleFoam -parallel
echo "End Parallel Run"

I obtain these files and the run does not progress:
lanza.sh.po38
Code:
-catch_rsh /opt/sge/default/spool/nodo01/active_jobs/38.1/pe_hostfile
nodo01
nodo01
nodo01
nodo01
nodo01
nodo01
nodo01
nodo01
nodo01
.......
lanza.sh.o38
Code:
Start
Host key verification failed.
Host key verification failed.
Host key verification failed.
Host key verification failed.
Host key verification failed.
Host key verification failed.
Host key verification failed.
Host key verification failed.
Host key verification failed.
Host key verification failed.
Host key verification failed.
Host key verification failed.
Host key verification failed.
Host key verification failed.
Host key verification failed.
Host key verification failed.
Host key verification failed.
--------------------------------------------------------------------------
A daemon (pid 8509) died unexpectedly with status 255 while attempting
to launch so we are aborting.

There may be more information reported by the environment (see above).

This may be because the daemon was unable to find all the needed shared
libraries on the remote node. You may set your LD_LIBRARY_PATH to have the
location of the shared libraries on the remote nodes and this will
automatically be forwarded to the remote nodes.
--------------------------------------------------------------------------
--------------------------------------------------------------------------
mpirun noticed that the job aborted, but has no info as to the process
that caused that situation.
--------------------------------------------------------------------------
End Parallel Run
Any idea ab
be_inspired is offline   Reply With Quote

Old   December 22, 2015, 13:53
Default
  #2
Senior Member
 
Joachim Herb
Join Date: Sep 2010
Posts: 650
Rep Power: 22
jherb is on a distinguished road
can you login into all nodes using ssh without giving a password?
jherb is offline   Reply With Quote

Reply


Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are Off
Pingbacks are On
Refbacks are On


Similar Threads
Thread Thread Starter Forum Replies Last Post
topoSet simpleFoam parallelized run error HakikiCanakkaleli OpenFOAM Pre-Processing 5 October 5, 2018 11:52
Problem in simpleFoam airFoil2D forceCoeffs junkie71189 OpenFOAM Running, Solving & CFD 31 March 11, 2017 22:56
Help Troubleshooting simpleFoam problem on Harpoon made mesh lhcamilo OpenFOAM Bugs 1 February 18, 2009 08:11
transient problem run in steady state luigi FLUENT 4 March 13, 2008 07:54
Problem on Parallel Run Setup Hamidur Rahman CFX 0 September 23, 2007 18:11


All times are GMT -4. The time now is 02:53.