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Error glibc detected munmap_chunk invalid pointer |
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June 2, 2008, 09:15 |
Hello World.
When trying to
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#1 |
Senior Member
Sebastian Gatzka
Join Date: Mar 2009
Location: Frankfurt, Germany
Posts: 729
Rep Power: 20 |
Hello World.
When trying to run this case I get this message. I don't know what to do now. Is this because I used some kind of wedge-boundaries? http://therealsega.th.funpic.de/open...se2DAxi.tar.gz /*---------------------------------------------------------------------------*\ | ========= | | | \ / F ield | OpenFOAM: The Open Source CFD Toolbox | | \ / O peration | Version: 1.4.1 | | \ / A nd | Web: http://www.openfoam.org | | \/ M anipulation | | \*---------------------------------------------------------------------------*/ Exec : interFoam . . Date : Jun 02 2008 Time : 14:10:25 Host : M1530 PID : 6469 Root : /home/sega/OpenFOAM/sega-1.4.1/run/rise2DAxi Case : . Nprocs : 1 Create time Create mesh for time = 0 Reading environmentalProperties Reading field pd Reading field gamma Reading field U Reading/calculating face flux field phi Reading transportProperties Selecting incompressible transport model Newtonian Selecting incompressible transport model Newtonian Calculating field g.h time step continuity errors : sum local = 0, global = 0, cumulative = 0 DICPCG: Solving for pcorr, Initial residual = 0, Final residual = 0, No Iterations 0 *** glibc detected *** interFoam: munmap_chunk(): invalid pointer: 0x08f838d0 *** ======= Backtrace: ========= /lib/tls/i686/cmov/libc.so.6(cfree+0x1bb)[0xb6e5792b] /home/sega/OpenFOAM/linux/gcc-4.2.1/lib/libstdc++.so.6(_ZdlPv+0x21)[0xb7030a71] /home/sega/OpenFOAM/linux/gcc-4.2.1/lib/libstdc++.so.6(_ZdaPv+0x1d)[0xb7030acd] interFoam(_ZN4Foam7PtrListINS_5FieldIdEEED2Ev+0x46 )[0x806de16] interFoam(_ZN4Foam8fvMatrixIdED1Ev+0x59)[0x806dfd9] interFoam[0x806163d] /lib/tls/i686/cmov/libc.so.6(__libc_start_main+0xe0)[0xb6e00050] interFoam(_ZN4Foam11regIOobject14readIfModifiedEv+ 0x1f5)[0x805f501] ======= Memory map: ======== 08048000-080de000 r-xp 00000000 08:01 459924 /home/sega/OpenFOAM/OpenFOAM-1.4.1/applications/bin/linuxGccDPOpt/interFoam 080de000-080df000 r--p 00096000 08:01 459924 /home/sega/OpenFOAM/OpenFOAM-1.4.1/applications/bin/linuxGccDPOpt/interFoam 080df000-080e0000 rw-p 00097000 08:01 459924 /home/sega/OpenFOAM/OpenFOAM-1.4.1/applications/bin/linuxGccDPOpt/interFoam 080e0000-09040000 rw-p 080e0000 00:00 0 [heap] b618e000-b6279000 rw-p b618e000 00:00 0 b6364000-b6786000 rw-p b6364000 00:00 0 b67fc000-b6824000 rw-p b67fc000 00:00 0 b684c000-b6a74000 rw-p b684c000 00:00 0 b6a74000-b6a7d000 r-xp 00000000 08:01 129878 /lib/tls/i686/cmov/libnss_files-2.6.1.so b6a7d000-b6a7f000 rw-p 00008000 08:01 129878 /lib/tls/i686/cmov/libnss_files-2.6.1.so b6a7f000-b6a87000 r-xp 00000000 08:01 129882 /lib/tls/i686/cmov/libnss_nis-2.6.1.so b6a87000-b6a89000 rw-p 00007000 08:01 129882 /lib/tls/i686/cmov/libnss_nis-2.6.1.so b6a97000-b6a99000 rw-p b6a97000 00:00 0 b6a99000-b6a9b000 r-xp 00000000 08:01 129931 /lib/tls/i686/cmov/libutil-2.6.1.so b6a9b000-b6a9d000 rw-p 00001000 08:01 129931 /lib/tls/i686/cmov/libutil-2.6.1.so b6a9d000-b6a9e000 rw-p b6a9d000 00:00 0 b6a9e000-b6ab2000 r-xp 00000000 08:01 129869 /lib/tls/i686/cmov/libnsl-2.6.1.so b6ab2000-b6ab4000 rw-p 00013000 08:01 129869 /lib/tls/i686/cmov/libnsl-2.6.1.so b6ab4000-b6ab6000 rw-p b6ab4000 00:00 0 b6ab6000-b6aea000 r-xp 00000000 08:01 438077 /home/sega/OpenFOAM/OpenFOAM-1.4.1/src/openmpi-1.2.3/platforms/linuxGccDPOpt/lib /libopen-pal.so.0.0.0 b6aea000-b6aeb000 r--p 00033000 08:01 438077 /home/sega/OpenFOAM/OpenFOAM-1.4.1/src/openmpi-1.2.3/platforms/linuxGccDPOpt/lib /libopen-pal.so.0.0.0 b6aeb000-b6aec000 rw-p 00034000 08:01 438077 /home/sega/OpenFOAM/OpenFOAM-1.4.1/src/openmpi-1.2.3/platforms/linuxGccDPOpt/lib /libopen-pal.so.0.0.0 b6aec000-b6b0e000 rw-p b6aec000 00:00 0 b6b0e000-b6b5d000 r-xp 00000000 08:01 438079 /home/sega/OpenFOAM/OpenFOAM-1.4.1/src/openmpi-1.2.3/platforms/linuxGccDPOpt/lib /libopen-rte.so.0.0.0 b6b5d000-b6b5e000 r--p 0004f000 08:01 438079 /home/sega/OpenFOAM/OpenFOAM-1.4.1/src/openmpi-1.2.3/platforms/linuxGccDPOpt/lib /libopen-rte.so.0.0.0 b6b5e000-b6b60000 rw-p 00050000 08:01 438079 /home/sega/OpenFOAM/OpenFOAM-1.4.1/src/openmpi-1.2.3/platforms/linuxGccDPOpt/lib /libopen-rte.so.0.0.0 b6b60000-b6b62000 r-xp 00000000 08:01 359452 /home/sega/OpenFOAM/OpenFOAM-1.4.1/lib/linuxGccDPOpt/liblagrangian.so b6b62000-b6b63000 r--p 00001000 08:01 359452 /home/sega/OpenFOAM/OpenFOAM-1.4.1/lib/linuxGccDPOpt/liblagrangian.so b6b63000-b6b64000 rw-p 00002000 08:01 359452 /home/sega/OpenFOAM/OpenFOAM-1.4.1/lib/linuxGccDPOpt/liblagrangian.so b6b64000-b6b65000 rw-p b6b64000 00:00 0 b6b65000-b6bd3000 r-xp 00000000 08:01 438070 /home/sega/OpenFOAM/OpenFOAM-1.4.1/src/openmpi-1.2.3/platforms/linuxGccDPOpt/lib /libmpi.so.0.0.0 b6bd3000-b6bd4000 r--p 0006d000 08:01 438070 /home/sega/OpenFOAM/OpenFOAM-1.4.1/src/openmpi-1.2.3/platforms/linuxGccDPOpt/lib /libmpi.so.0.0.0 b6bd4000-b6bdb000 rw-p 0006e000 08:01 438070 /home/sega/OpenFOAM/OpenFOAM-1.4.1/src/openmpi-1.2.3/platforms/linuxGccDPOpt/lib /libmpi.so.0.0.0 b6bdb000-b6be1000 rw-p b6bdb000 00:00 0 b6be1000-b6bf3000 r-xp 00000000 08:01 359465 /home/sega/OpenFOAM/OpenFOAM-1.4.1/lib/linuxGccDPOpt/libz.so b6bf3000-b6bf4000 r--p 00011000 08:01 359465 /home/sega/OpenFOAM/OpenFOAM-1.4.1/lib/linuxGccDPOpt/libz.so b6bf4000-b6bf5000 rw-p 00012000 08:01 359465 /home/sega/OpenFOAM/OpenFOAM-1.4.1/lib/linuxGccDPOpt/libz.so b6bf5000-b6d5a000 r-xp 00000000 08:01 359464 /home/sega/OpenFOAM/OpenFOAM-1.4.1/lib/linuxGccDPOpt/libmeshTools.so b6d5a000-b6d5c000 r--p 00164000 08:01 359464 /home/sega/OpenFOAM/OpenFOAM-1.4.1/lib/linuxGccDPOpt/libmeshTools.so b6d5c000-b6d5e000 rw-p 00166000 08:01 359464 /home/sega/OpenFOAM/OpenFOAM-1.4.1/lib/linuxGccDPOpt/libmeshTools.so b6d5e000-b6dde000 r-xp 00000000 08:01 359481 /home/sega/OpenFOAM/OpenFOAM-1.4.1/lib/linuxGccDPOpt/libtriSurface.so b6dde000-b6ddf000 r--p 00080000 08:01 359481 /home/sega/OpenFOAM/OpenFOAM-1.4.1/lib/linuxGccDPOpt/libtriSurface.so b6ddf000-b6de0000 rw-p 00081000 08:01 359481 /home/sega/OpenFOAM/OpenFOAM-1.4.1/lib/linuxGccDPOpt/libtriSurface.so b6de0000-b6de1000 rw-p b6de0000 00:00 0 b6de1000-b6de8000 r-xp 00000000 08:01 380245 /home/sega/OpenFOAM/OpenFOAM-1.4.1/lib/linuxGccDPOpt/openmpi-1.2.3/libPstream.so b6de8000-b6de9000 r--p 00006000 08:01 380245 /home/sega/OpenFOAM/OpenFOAM-1.4.1/lib/linuxGccDPOpt/openmpi-1.2.3/libPstream.so b6de9000-b6dea000 rw-p 00007000 08:01 380245 /home/sega/OpenFOAM/OpenFOAM-1.4.1/lib/linuxGccDPOpt/openmpi-1.2.3/libPstream.so b6dea000-b6f2e000 r-xp 00000000 08:01 129819 /lib/tls/i686/cmov/libc-2.6.1.so b6f2e000-b6f2f000 r--p 00143000 08:01 129819 /lib/tls/i686/cmov/libc-2.6.1.so b6f2f000-b6f31000 rw-p 00144000 08:01 129819 /lib/tls/i686/cmov/libc-2.6.1.so b6f31000-b6f34000 rw-p b6f31000 00:00 0 b6f34000-b6f48000 r-xp 00000000 08:01 129904 /lib/tls/i686/cmov/libpthread-2.6.1.so b6f48000-b6f4a000 rw-p 00013000 08:01 129904 /lib/tls/i686/cmov/libpthread-2.6.1.so b6f4a000-b6f4c000 rw-p b6f4a000 00:00 0 b6f4c000-b6f56000 r-xp 00000000 08:01 461672 /home/sega/OpenFOAM/linux/gcc-4.2.1/lib/libgcc_s.so.1 b6f56000-b6f57000 rw-p 00009000 08:01 461672 /home/sega/OpenFOAM/linux/gcc-4.2.1/lib/libgcc_s.so.1 b6f57000-b6f7a000 r-xp 00000000 08:01 129851 /lib/tls/i686/cmov/libm-2.6.1.so b6f7a000-b6f7c000 rw-p 00023000 08:01 129851 /lib/tls/i686/cmov/libm-2.6.1.so b6f7c000-b6f7d000 rw-p b6f7c000 00:00 0 b6f7d000-b705b000 r-xp 00000000 08:01 461682 /home/sega/OpenFOAM/linux/gcc-4.2.1/lib/libstdc++.so.6.0.9 b705b000-b705f000 r--p 000dd000 08:01 461682 /home/sega/OpenFOAM/linux/gcc-4.2.1/lib/libstdc++.so.6.0.9 b705f000-b7060000 rw-p 000e1000 08:01 461682 /home/sega/OpenFOAM/linux/gcc-4.2.1/lib/libstdc++.so.6.0.9 b7060000-b7066000 rw-p b7060000 00:00 0 b7066000-b7068000 r-xp 00000000 08:01 129844 /lib/tls/i686/cmov/libdl-2.6.1.so b7068000-b706a000 rw-p 00001000 08:01 129844 /lib/tls/i686/cmov/libdl-2.6.1.so b706e000-b7075000 r-xp 00000000 08:01 129874 /lib/tls/i686/cmov/libnss_compat-2.6.1.so b7075000-b7077000 rw-p 00006000 08:01 129874 /lib/tls/i686/cmov/libnss_compat-2.6.1.so b7077000-b7078000 rw-p b7077000 00:00 0 b7078000-b73e0000 r-xp 00000000 08:01 359500 /home/sega/OpenFOAM/OpenFOAM-1.4.1/lib/linuxGccDPOpt/libOpenFOAM.so b73e0000-b73e8000 r--p 00367000 08:01 359500 /home/sega/OpenFOAM/OpenFOAM-1.4.1/lib/linuxGccDPOpt/libOpenFOAM.so b73e8000-b73eb000 rw-p 0036f000 08:01 359500 /home/sega/OpenFOAM/OpenFOAM-1.4.1/lib/linuxGccDPOpt/libOpenFOAM.so b73eb000-b73ef000 rw-p b73eb000 00:00 0 b73ef000-b7e9a000 r-xp 00000000 08:01 359456 /home/sega/OpenFOAM/OpenFOAM-1.4.1/lib/linuxGccDPOpt/libfiniteVolume.so b7e9a000-b7eb2000 r--p 00aaa000 08:01 359456 /home/sega/OpenFOAM/OpenFOAM-1.4.1/lib/linuxGccDPOpt/libfiniteVolume.so b7eb2000-b7eb6000 rw-p 00ac2000 08:01 359456 /home/sega/OpenFOAM/OpenFOAM-1.4.1/lib/linuxGccDPOpt/libfiniteVolume.so b7eb6000-b7eb9000 rw-p b7eb6000 00:00 0 b7eb9000-b7f06000 r-xp 00000000 08:01 359453 /home/sega/OpenFOAM/OpenFOAM-1.4.1/lib/linuxGccDPOpt/libincompressibleTransportM odels.so b7f06000-b7f07000 r--p 0004c000 08:01 359453 /home/sega/OpenFOAM/OpenFOAM-1.4.1/lib/linuxGccDPOpt/libincompressibleTransportM odels.so b7f07000-b7f08000 rw-p 0004d000 08:01 359453 /home/sega/OpenFOAM/OpenFOAM-1.4.1/lib/linuxGccDPOpt/libincompressibleTransportM odels.so b7f08000-b7f09000 rw-p b7f08000 00:00 0 b7f09000-b7f71000 r-xp 00000000 08:01 359485 /home/sega/OpenFOAM/OpenFOAM-1.4.1/lib/linuxGccDPOpt/libinterfaceProperties.so b7f71000-b7f72000 r--p 00068000 08:01 359485 /home/sega/OpenFOAM/OpenFOAM-1.4.1/lib/linuxGccDPOpt/libinterfaceProperties.so b7f72000-b7f73000 rw-p 00069000 08:01 359485 /home/sega/OpenFOAM/OpenFOAM-1.4.1/lib/linuxGccDPOpt/libinterfaceProperties.so b7f73000-b7f75000 rw-p b7f73000 00:00 0 b7f75000-b7f8f000 r-xp 00000000 08:01 136012 /lib/ld-2.6.1.so b7f8f000-b7f91000 rw-p 00019000 08:01 136012 /lib/ld-2.6.1.so bfd22000-bfd39000 rw-p bfd22000 00:00 0 [stack] ffffe000-fffff000 r-xp 00000000 00:00 0 [vdso] Aborted (core dumped)
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Schrödingers wife: "What did you do to the cat? It's half dead!" |
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June 2, 2008, 15:22 |
Split your wedge into two, one
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#2 |
Senior Member
Mattijs Janssens
Join Date: Mar 2009
Posts: 1,419
Rep Power: 26 |
Split your wedge into two, one for front and one for back. Have a look at one of the wedge cases in the tutorials (in $FOAM_TUTORIALS)
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June 2, 2008, 16:06 |
I split the wedge in two (fron
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#3 |
Senior Member
Sebastian Gatzka
Join Date: Mar 2009
Location: Frankfurt, Germany
Posts: 729
Rep Power: 20 |
I split the wedge in two (front & back) but the problem is persistent.
Any other ideas?
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Schrödingers wife: "What did you do to the cat? It's half dead!" |
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June 3, 2008, 04:23 |
I think I made a mistake with
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#4 |
Senior Member
Sebastian Gatzka
Join Date: Mar 2009
Location: Frankfurt, Germany
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Rep Power: 20 |
I think I made a mistake with the pressure reference (PISO) in fvSolution.
I fixed it an now its working. Maybe that was the problem.
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Schrödingers wife: "What did you do to the cat? It's half dead!" |
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June 3, 2008, 05:53 |
Problem seems to be in
Foam
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#5 |
Senior Member
Mattijs Janssens
Join Date: Mar 2009
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Problem seems to be in
Foam::PtrList<foam::field<double> >::~PtrList() which gets called from the destructor of fvMatrix. Is this stock 1.4.1? Can you repost corrected case? |
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June 3, 2008, 08:36 |
Here is the case:
http://th
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#6 |
Senior Member
Sebastian Gatzka
Join Date: Mar 2009
Location: Frankfurt, Germany
Posts: 729
Rep Power: 20 |
Here is the case:
http://therealsega.th.funpic.de/open...AxiSend.tar.gz As you will see, I have uncommented the pdRefCell and Value entry in fvSolution and put a pressure boundary into 0/pd The case is running and the results look good.
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Schrödingers wife: "What did you do to the cat? It's half dead!" |
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June 3, 2008, 19:30 |
Thanks. Ran it in valgrind and
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#7 |
Senior Member
Mattijs Janssens
Join Date: Mar 2009
Posts: 1,419
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Thanks. Ran it in valgrind and all is ok. Only memory leak is from the getpwuid system call.
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