[Miguel Hernandez]

Hello, everyone,
I am trying out an interFoam project using dymanicMesh (AMR). I have added the dynamicMesDict (which I attach). However, I always get this error, or something very similar.

ERROR:

Courant Number mean: 3.3012e-06 max: 0.0890991
Interface Courant Number mean: 8.65469e-09 max: 0.0485634
deltaT = 0.000865622
Time = 0.00218472

PIMPLE: iteration 1
Selected 86670 cells for refinement out of 599299.
[1] hexRef8 : Dumping cell as obj to "/home/openfoam/run/Piano_Key/processor1/cell_6421.obj"
[1] 
[1] 
[1] --> FOAM FATAL ERROR: (openfoam-2112)
[1] nAnchors:2 facei:160757
[1] 
[1]     From void Foam::hexRef8::createInternalFaces(const labelListList&, const labelListList&, const labelList&, const labelList&, const labelList&, const labelList&, Foam::label, Foam::polyTopoChange&) const
[1]     in file polyTopoChange/polyTopoChange/hexRef8/hexRef8.C at line 1277.
[1] 
FOAM parallel run aborting
[1] 
[1] #0  Foam::error::printStack(Foam::Ostream&)[6] hexRef8 : Dumping cell as obj to "/home/openfoam/run/Piano_Key/processor6/cell_15286.obj"
[7] hexRef8 : Dumping cell as obj to "/home/openfoam/run/Piano_Key/processor7/cell_10797.obj"
sh: addr2line: command not found
 addr2line failed
[1] #1  Foam::error::simpleExit(int, bool)sh: addr2line: command not found
[6] 
[6] 
[6] --> FOAM FATAL ERROR: (openfoam-2112)
[6] nAnchors:2 facei:171663
[6] 
[6]     From void Foam::hexRef8::createInternalFaces(const labelListList&, const labelListList&, const labelList&, const labelList&, const labelList&, const labelList&, Foam::label, Foam::polyTopoChange&) const
[6]     in file polyTopoChange/polyTopoChange/hexRef8/hexRef8.C at line 1277.
[6] 
FOAM parallel run aborting
[6] 
[6] #0  Foam::error::printStack(Foam::Ostream&) addr2line failed
[1] #2  Foam::error::exiting(int, bool)[7] 
[7] 
[7] --> FOAM FATAL ERROR: (openfoam-2112)
[7] nAnchors:2 facei:198318
[7] 
[7]     From void Foam::hexRef8::createInternalFaces(const labelListList&, const labelListList&, const labelList&, const labelList&, const labelList&, const labelList&, Foam::label, Foam::polyTopoChange&) const
[7]     in file polyTopoChange/polyTopoChange/hexRef8/hexRef8.C at line 1277.
[7] 
FOAM parallel run aborting
[7] 
[7] #0  Foam::error::printStack(Foam::Ostream&)sh: addr2line: command not found
 addr2line failed
[6] #1  Foam::error::simpleExit(int, bool)sh: addr2line: command not found
 addr2line failed
[7] #1  Foam::error::simpleExit(int, bool)sh: addr2line: command not found
 addr2line failed
[1] #3  Foam::hexRef8::createInternalFaces(Foam::List<Foam::List<int> > const&, Foam::List<Foam::List<int> > const&, Foam::List<int> const&, Foam::List<int> const&, Foam::List<int> const&, Foam::List<int> const&, int, Foam::polyTopoChange&) constsh: addr2line: command not found
 addr2line failed
[7] #2  Foam::error::exiting(int, bool)sh: addr2line: command not found
 addr2line failed
[6] #2  Foam::error::exiting(int, bool)sh: addr2line: command not found
 addr2line failed
[6] #3  Foam::hexRef8::createInternalFaces(Foam::List<Foam::List<int> > const&, Foam::List<Foam::List<int> > const&, Foam::List<int> const&, Foam::List<int> const&, Foam::List<int> const&, Foam::List<int> const&, int, Foam::polyTopoChange&) constsh: addr2line: command not found
 addr2line failed
[7] #3  Foam::hexRef8::createInternalFaces(Foam::List<Foam::List<int> > const&, Foam::List<Foam::List<int> > const&, Foam::List<int> const&, Foam::List<int> const&, Foam::List<int> const&, Foam::List<int> const&, int, Foam::polyTopoChange&) constsh: addr2line: command not found
 addr2line failed
[1] #4  Foam::hexRef8::setRefinement(Foam::List<int> const&, Foam::polyTopoChange&)sh: addr2line: command not found
sh: addr2line: command not found
 addr2line failed
[6] #4  Foam::hexRef8::setRefinement(Foam::List<int> const&, Foam::polyTopoChange&) addr2line failed
[7] #4  Foam::hexRef8::setRefinement(Foam::List<int> const&, Foam::polyTopoChange&)sh: addr2line: command not found
 addr2line failed
[1] #5  Foam::dynamicRefineFvMesh::refine(Foam::List<int> const&)sh: addr2line: command not found
sh: addr2line: command not found
 addr2line failed
[6] #5  Foam::dynamicRefineFvMesh::refine(Foam::List<int> const&) addr2line failed
[7] #5  Foam::dynamicRefineFvMesh::refine(Foam::List<int> const&)sh: addr2line: command not found
 addr2line failed
[1] #6  Foam::dynamicRefineFvMesh::update()sh: addr2line: command not found
 addr2line failed
[6] #6  Foam::dynamicRefineFvMesh::update()sh: addr2line: command not found
 addr2line failed
[7] #6  Foam::dynamicRefineFvMesh::update()sh: addr2line: command not found
 addr2line failed
[1] #7  sh: addr2line: command not found
 addr2line failed
[6] #7  sh: addr2line: command not found
sh: which: command not found
 addr2line failed
[7] #7  ?
[6] #8  __libc_start_mainsh: which: command not found
?
[1] #8  __libc_start_mainsh: addr2line: command not found
sh: which: command not found
?
[7] #8  __libc_start_main addr2line failed
[6] #9  sh: addr2line: command not found
 addr2line failed
[1] #9  sh: addr2line: command not found
 addr2line failed
[7] #9  sh: which: command not found
?
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 6 in communicator MPI_COMM_WORLD
with errorcode 1.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

dymanicMeshDict

/*--------------------------------*- C++ -*----------------------------------*\
| =========                 |                                                 |
| \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox           |
|  \\    /   O peration     | Version:  v2112                                 |
|   \\  /    A nd           | Website:  www.openfoam.com                      |
|    \\/     M anipulation  |                                                 |
\*---------------------------------------------------------------------------*/
FoamFile
{
    version     2.0;
    format      ascii;
    class       dictionary;
    location    "constant";
    object      dynamicMeshDict;
}
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //

dynamicFvMesh   dynamicRefineFvMesh;

// How often to refine in time
refineInterval  1;//2

// Field to be refinement on
field           alpha.water;

// Refine field inbetween lower..upper
lowerRefineLevel 0.001;
upperRefineLevel 0.999;

// If value < unrefineLevel unrefine
unrefineLevel   10;

// Have slower than 2:1 refinement
nBufferLayers   3;

// Refine cells only up to maxRefinement levels
maxRefinement   2;

// Stop refinement if maxCells reached
maxCells        15000000;

// Flux field and corresponding velocity field. Fluxes on changed
// faces get recalculated by interpolating the velocity. Use 'none'
// on surfaceScalarFields that do not need to be reinterpolated.
correctFluxes
(
    (phi none)
    (nHatf none)
    (rhoPhi none)
    (alphaPhi_ none)
    (ghf none)
    (phi0 none)
    (dVf_ none)
    (alphaPhi1Corr0 none)
);

// Write the refinement level as a volScalarField
dumpLevel       true;


// ************************************************************************* //

Can anyone help me out?

[farzadmech]

Hello
Try to use single CPU to see if the same problem happens?


Farzad