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#1 |
New Member
Jelle Lagerweij
Join Date: Jul 2022
Posts: 21
Rep Power: 4 ![]() |
Dear cfd friends,
I am a master student that just started his internship. I have used Ansys before and coded my own 2D FVM in python, but my temporary employer wants to use OpenFOAM. So I am learning something new. To make everything work, I created a clean ubuntu install and added Paraview, OpenFOAM and Bender to it. I also executed the following command: Code:
sudo apt-get -y install openmpi-bin After some single core tutorials, I encountered the depthCharge3D case. I think that I executed all basic commands correctly, in order: Code:
blockMesh Code:
decomposePar Code:
mpirun -np 4 compressibleInterFoam -parallel but I still get the following error message: Code:
--> FOAM FATAL ERROR: bool IPstream::init(int& argc, char**& argv) : attempt to run parallel on 1 processor From function static bool Foam::UPstream::init(int&, char**&, bool) in file UPstream.C at line 112. --> FOAM FATAL ERROR: bool IPstream::init(int& argc, char**& argv) : attempt to run parallel on 1 processor From function static bool Foam::UPstream::init(int&, char**&, bool) in file UPstream.C at line 112. FOAM aborting --> FOAM FATAL ERROR: bool IPstream::init(int& argc, char**& argv) : attempt to run parallel on 1 processor From function static bool Foam::UPstream::init(int&, char**&, bool) in file UPstream.C at line 112. FOAM aborting --> FOAM FATAL ERROR: bool IPstream::init(int& argc, char**& argv) : attempt to run parallel on 1 processor From function static bool Foam::UPstream::init(int&, char**&, bool) in file UPstream.C at line 112. FOAM aborting FOAM aborting #0 #0 #0 Foam::error::printStack(Foam::Ostream&)#0 Foam::error::printStack(Foam::Ostream&)Foam::error::printStack(Foam::Ostream&)Foam::error::printStack(Foam::Ostream&) at ??:? at ??:? at ??:? at ??:? #1 #1 Foam::error::abort()Foam::error::abort()#1 #1 Foam::error::abort()Foam::error::abort() at ??:? #2 Foam::UPstream::init(int&, char**&, bool) at ??:? #2 Foam::UPstream::init(int&, char**&, bool) at ??:? #2 Foam::UPstream::init(int&, char**&, bool) at ??:? #2 Foam::UPstream::init(int&, char**&, bool) at ??:? at ??:? at ??:? at ??:? #3 Foam::argList::argList(int&, char**&, bool, bool, bool)#3 #3 Foam::argList::argList(int&, char**&, bool, bool, bool)#3 Foam::argList::argList(int&, char**&, bool, bool, bool)Foam::argList::argList(int&, char**&, bool, bool, bool) at ??:? #4 at ??:? #4 at ??:? #4 at ??:? #4 ???? in in ""/opt/openfoam9/opt/openfoam9/platform in /platforms/linux64GccDPInt3s/linux64GccDPInt32Opt/bin/2Opt/bin/compressicompressibleInterFoa"/opt/openfoam9/platforms/linux64GccbleInterFoam" m" DPInt32Opt/bin/compressibleInterFoam" in #5 ?#"/opt/ope5 ?nfoam9/platforms/linu#5 ?x64GccDPInt32Opt/bin/compressibleInterFoam" #5 ? in "/lib/x86_64-linux-gnu/libc.so.6" in "/lib/x86_64-linux-gnu/libc.so.6" #6 #6 __libc_start_main__libc_start_main in "/lib/x in 86_64-linux-gnu/lib"/lib/x86_64-c.so.6" linux-gnu/libc.so.6" #6#6 __libc_start_main__libc_start_main in "/lib/x86_64-linux-gnu/libc.so.6" #7 in "/lib/x86_6 in "/lib/x86_64-linux-gnu/libc.so.6" 4-linux-gnu/libc.so.6" #7 #7 in "/lib/x86_64-linux-gnu/libc.so.6" #7 ???? in "/opt/openfoam9/platforms/linux64GccDPInt32Opt/bin/compressibleInterFoam" [jelle-IdeaPad-5-Pro-16ACH6:07394] *** Process received signal *** [jelle-IdeaPad-5-Pro-16ACH6:07394] Signal: Aborted (6) [jelle-IdeaPad-5-Pro-16ACH6:07394] Signal code: (-6) [jelle-IdeaPad-5-Pro-16ACH6:07394] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7fd627260520] [jelle-IdeaPad-5-Pro-16ACH6:07394] [ 1] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7fd6272b4a7c] [jelle-IdeaPad-5-Pro-16ACH6:07394] [ 2] in "/opt/openfoam9/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7fd627260476] [jelle-IdeaPad-5-Pro-16ACH6:07394] [ 3] /platforms/linux64GccDPInt32Opt in /bin/compressibleI"/opt/openfoanterFoam" m9/platforms/li/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7fd6272467f3] [jelle-IdeaPad-5-Pro-16ACH6:07394] [ 4] nux64GccDPInt32Opt/bin/compressibleInterFoam" [jelle-IdeaPad-5-Pro-16ACH6:07395] *** Process received signal *** [jelle-IdeaPad-5-Pro-16ACH6:07395] Signal: Aborted (6) [jelle-IdeaPad-5-Pro-16ACH6:07395] Signal code: (-6) [jelle-IdeaPad-5-Pro-16ACH6:07392] *** Process received signal *** [jelle-IdeaPad-5-Pro-16ACH6:07392] Signal: Aborted (6) [jelle-IdeaPad-5-Pro-16ACH6:07392] Signal code: (-6) [jelle-IdeaPad-5-Pro-16ACH6:07395] [ 0] [jelle-IdeaPad-5-Pro-16ACH6:07392] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f98eb713520] [jelle-IdeaPad-5-Pro-16ACH6:07395] [ 1] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f88d7b2e520] [jelle-IdeaPad-5-Pro-16ACH6:07392] [ 1] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f98eb767a7c] [jelle-IdeaPad-5-Pro-16ACH6:07395] [ 2] in "/opt/openfoam9/pla/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f98eb713476] [jelle-IdeaPad-5-Pro-16ACH6:07395] [ 3] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f88d7b82a7c] [jelle-IdeaPad-5-Pro-16ACH6:07392] [ 2] tforms/linux64GccDPInt32Opt/bin/compressibleInt/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f98eb6f97f3] [jelle-IdeaPad-5-Pro-16ACH6:07395] [ 4] erFoam" /lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f88d7b2e476] [jelle-IdeaPad-5-Pro-16ACH6:07392] [ 3] /lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f88d7b147f3] [jelle-IdeaPad-5-Pro-16ACH6:07392] [ 4] [jelle-IdeaPad-5-Pro-16ACH6:07393] *** Process received signal *** [jelle-IdeaPad-5-Pro-16ACH6:07393] Signal: Aborted (6) [jelle-IdeaPad-5-Pro-16ACH6:07393] Signal code: (-6) [jelle-IdeaPad-5-Pro-16ACH6:07393] [ 0] /opt/openfoam9/platforms/linux64GccDPInt32Opt/lib/libOpenFOAM.so(_ZN4Foam5error5abortEv+0x20d)[0x7fd627a5243d] [jelle-IdeaPad-5-Pro-16ACH6:07394] [ 5] /opt/openfoam9/platforms/linux64GccDPInt32Opt/lib/openmpi-system/libPstream.so(_ZN4Foam8UPstream4initERiRPPcb+0x3e9)[0x7fd627214d19] [jelle-IdeaPad-5-Pro-16ACH6:07394] [ 6] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7ff84935f520] [jelle-IdeaPad-5-Pro-16ACH6:07393] [ 1] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7ff8493b3a7c] [jelle-IdeaPad-5-Pro-16ACH6:07393] [ 2] /lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7ff84935f476] [jelle-IdeaPad-5-Pro-16ACH6:07393] [ 3] /lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7ff8493457f3] [jelle-IdeaPad-5-Pro-16ACH6:07393] [ 4] /opt/openfoam9/platforms/linux64GccDPInt32Opt/lib/libOpenFOAM.so(_ZN4Foam5error5abortEv+0x20d)[0x7f98ebf0543d] [jelle-IdeaPad-5-Pro-16ACH6:07395] [ 5] /opt/openfoam9/platforms/linux64GccDPInt32Opt/lib/openmpi-system/libPstream.so(_ZN4Foam8UPstream4initERiRPPcb+0x3e9)[0x7f98eb6c7d19] [jelle-IdeaPad-5-Pro-16ACH6:07395] [ 6] /opt/openfoam9/platforms/linux64GccDPInt32Opt/lib/libOpenFOAM.so(_ZN4Foam5error5abortEv+0x20d)[0x7f88d832043d] [jelle-IdeaPad-5-Pro-16ACH6:07392] [ 5] /opt/openfoam9/platforms/linux64GccDPInt32Opt/lib/openmpi-system/libPstream.so(_ZN4Foam8UPstream4initERiRPPcb+0x3e9)[0x7f88d7ae2d19] [jelle-IdeaPad-5-Pro-16ACH6:07392] [ 6] /opt/openfoam9/platforms/linux64GccDPInt32Opt/lib/libOpenFOAM.so(_ZN4Foam7argListC1ERiRPPcbbb+0x7a8)[0x7fd627a6dbf8] [jelle-IdeaPad-5-Pro-16ACH6:07394] [ 7] compressibleInterFoam(+0x4a744)[0x55bd83793744] [jelle-IdeaPad-5-Pro-16ACH6:07394] [ 8] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7fd627247d90] [jelle-IdeaPad-5-Pro-16ACH6:07394] [ 9] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7fd627247e40] [jelle-IdeaPad-5-Pro-16ACH6:07394] [10] /opt/openfoam9/platforms/linux64GccDPInt32Opt/lib/libOpenFOAM.so(_ZN4Foam7argListC1ERiRPPcbbb+0x7a8)[0x7f98ebf20bf8] [jelle-IdeaPad-5-Pro-16ACH6:07395] [ 7] /opt/openfoam9/platforms/linux64GccDPInt32Opt/lib/libOpenFOAM.so(_ZN4Foam7argListC1ERiRPPcbbb+0x7a8)[0x7f88d833bbf8] [jelle-IdeaPad-5-Pro-16ACH6:07392] compressibleInterFoam(+0x5d7e5)[0x55bd837a67e5] [jelle-IdeaPad-5-Pro-16ACH6:07394] *** End of error message *** compressibleInterFoam(+0x4a744)[0x557f23976744] [jelle-IdeaPad-5-Pro-16ACH6:07395] [ 8] [ 7] compressibleInterFoam(+0x4a744)[0x561c01670744] [jelle-IdeaPad-5-Pro-16ACH6:07392] [ 8] /opt/openfoam9/platforms/linux64GccDPInt32Opt/lib/libOpenFOAM.so(_ZN4Foam5error5abortEv+0x20d)[0x7ff849b5143d] [jelle-IdeaPad-5-Pro-16ACH6:07393] [ 5] /opt/openfoam9/platforms/linux64GccDPInt32Opt/lib/openmpi-system/libPstream.so(_ZN4Foam8UPstream4initERiRPPcb+0x3e9)[0x7ff849313d19] [jelle-IdeaPad-5-Pro-16ACH6:07393] [ 6] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f98eb6fad90] [jelle-IdeaPad-5-Pro-16ACH6:07395] [ 9] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f98eb6fae40] [jelle-IdeaPad-5-Pro-16ACH6:07395] [10] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f88d7b15d90] [jelle-IdeaPad-5-Pro-16ACH6:07392] [ 9] compressibleInterFoam(+0x5d7e5)[0x557f239897e5] [jelle-IdeaPad-5-Pro-16ACH6:07395] *** End of error message *** /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f88d7b15e40] [jelle-IdeaPad-5-Pro-16ACH6:07392] [10] compressibleInterFoam(+0x5d7e5)[0x561c016837e5] [jelle-IdeaPad-5-Pro-16ACH6:07392] *** End of error message *** /opt/openfoam9/platforms/linux64GccDPInt32Opt/lib/libOpenFOAM.so(_ZN4Foam7argListC1ERiRPPcbbb+0x7a8)[0x7ff849b6cbf8] [jelle-IdeaPad-5-Pro-16ACH6:07393] [ 7] compressibleInterFoam(+0x4a744)[0x55a3eb964744] [jelle-IdeaPad-5-Pro-16ACH6:07393] [ 8] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7ff849346d90] [jelle-IdeaPad-5-Pro-16ACH6:07393] [ 9] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7ff849346e40] [jelle-IdeaPad-5-Pro-16ACH6:07393] [10] compressibleInterFoam(+0x5d7e5)[0x55a3eb9777e5] [jelle-IdeaPad-5-Pro-16ACH6:07393] *** End of error message *** =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = PID 7392 RUNNING AT jelle-IdeaPad-5-Pro-16ACH6 = EXIT CODE: 134 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES =================================================================================== YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Aborted (signal 6) This typically refers to a problem with your application. Please see the FAQ page for debugging suggestions Code:
mpirun --help |
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#2 |
New Member
Jelle Lagerweij
Join Date: Jul 2022
Posts: 21
Rep Power: 4 ![]() |
I did notice that my problem is probably the same as Problems with running in parallel, but sadly, that thread only states that a solution is reached, not how.
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#3 |
New Member
Yousuf Ali
Join Date: Apr 2023
Posts: 2
Rep Power: 0 ![]() |
Hi..
I had this problem. I removed anaconda. Then it was working. I dont know how but they are connected. Maybe you have installed anaconda in ubuntu also for python. If that is the case. Try removing it |
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#4 |
New Member
Join Date: May 2019
Posts: 6
Rep Power: 7 ![]() |
Hi Jelle,
I had the same issue after updating Ubuntu on my computer. I found the solution to my problem at the end of the Installation wiki of openfoam.com: https://develop.openfoam.com/Develop...am-environment Apparently this error is documented, and the following commands solved my problem: $ sudo dpkg --remove --force-all libopenmpi-dev $ sudo apt install libopenmpi-dev Sorry for the late reply, but maybe it can be helpful for someone else. Best regards, Pablo |
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Tags |
multicore, parallel |
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