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April 21, 2019, 04:52 |
Run parallel but low calculating speed
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#1 |
New Member
Join Date: Apr 2019
Location: China,beijing
Posts: 4
Rep Power: 7 |
Dear foamers:
I used OpenFOAM to calculate turbulent boundary layers (TBL) on supercomputer. I tried to divide computing domain into 4, 10, 24parts respectively to run them in parallel. The point is that the more parts I divided the domain, the more calculating time it consumed. The numerical methodology I used was LES and the sub-grid model was dynSmagorinsky. The size of computing domain was 90mm(stream-wise)*10mm(span-wise)*10mm(vertical to the smooth plane). The inlet velocity was 7m/s. There was a 19mm import part in front of the smooth plane and a 20mm export part behind the smooth plane, both of which were slip boundary. Between the smooth plane and import part was a semi-cylinder trip(r=0.5mm) to add perturbation to the field. The top boundary type was slip. The side boundary types are cyclic. The number of grid is about 8 million. The smallest grids closed to the smooth plane are 0.002mm in length. my checkMesh log: Create time Create polyMesh for time = 0 Time = 0 Mesh stats all points: 8134521 live points: 8134521 all faces: 24033500 live faces: 24033500 internal faces: 23666500 cells: 7950000 boundary patches: 8 point zones: 0 face zones: 0 cell zones: 0 Overall number of cells of each type: hexahedra: 7950000 prisms: 0 wedges: 0 pyramids: 0 tet wedges: 0 tetrahedra: 0 polyhedra: 0 Checking topology... Boundary definition OK. Point usage OK. Upper triangular ordering OK. Face vertices OK. Number of regions: 1 (OK). Checking patch topology for multiply connected surfaces ... Patch Faces Points Area [m^2] Surface topology INLET 10500 10721 0.0001 ok (non-closed singly connected) OUTLET 10500 10721 0.0001 ok (non-closed singly connected) UP 111000 111891 0.0009 ok (non-closed singly connected) FRONT 7500 7701 0.00019 ok (non-closed singly connected) PLANE 100500 101321 0.0005 ok (non-closed singly connected) BEHIND 6000 6191 0.0002 ok (non-closed singly connected) TRIP 15000 15251 1.57023e-05 ok (non-closed singly connected) PERIODIC 106000 107742 0.00179922 ok (non-closed singly connected) Checking geometry... This is a 3-D mesh Overall domain bounding box (-0.0594563 -4.33681e-19 -0.0146693) (0.0305437 0.01 -0.00466934) Mesh (non-empty, non-wedge) directions (1 1 1) Mesh (non-empty) directions (1 1 1) Mesh (non-empty, non-wedge) dimensions 3 Boundary openness (1.03848e-15 1.55099e-13 2.48007e-14) Threshold = 1e-06 OK. Max cell openness = 3.30422e-16 OK. Max aspect ratio = 555.656 OK. Minumum face area = 3.99642e-12. Maximum face area = 4.50651e-07. Face area magnitudes OK. Min volume = 2.66428e-16. Max volume = 3.00434e-11. Total volume = 8.99608e-06. Cell volumes OK. Mesh non-orthogonality Max: 43.0859 average: 6.23771 Threshold = 70 Non-orthogonality check OK. Face pyramids OK. Max skewness = 2.11452 OK. Mesh OK. --> FOAM Warning : From function polyMesh::readUpdateState polyMesh::readUpdate() in file meshes/polyMesh/polyMeshIO.C at line 226 Number of patches has changed. This may have unexpected consequences. Proceed with care. Time = 1e-07 Mesh stats all points: 8134521 live points: 8134521 all faces: 24033500 live faces: 24033500 internal faces: 23666500 cells: 7950000 boundary patches: 8 point zones: 0 face zones: 0 cell zones: 0 Overall number of cells of each type: hexahedra: 7950000 prisms: 0 wedges: 0 pyramids: 0 tet wedges: 0 tetrahedra: 0 polyhedra: 0 Checking topology... Boundary definition OK. Point usage OK. Upper triangular ordering OK. Face vertices OK. Number of regions: 1 (OK). Checking patch topology for multiply connected surfaces ... Patch Faces Points Area [m^2] Surface topology INLET 10500 10721 0.0001 ok (non-closed singly connected) OUTLET 10500 10721 0.0001 ok (non-closed singly connected) UP 111000 111891 0.0009 ok (non-closed singly connected) FRONT 7500 7701 0.00019 ok (non-closed singly connected) PLANE 100500 101321 0.0005 ok (non-closed singly connected) BEHIND 6000 6191 0.0002 ok (non-closed singly connected) TRIP 15000 15251 1.57023e-05 ok (non-closed singly connected) PERIODIC 106000 107742 0.00179922 ok (non-closed singly connected) Checking geometry... This is a 3-D mesh Overall domain bounding box (-0.0594563 -4.33681e-19 -0.0146693) (0.0305437 0.01 -0.00466934) Mesh (non-empty, non-wedge) directions (1 1 1) Mesh (non-empty) directions (1 1 1) Mesh (non-empty, non-wedge) dimensions 3 Boundary openness (1.03848e-15 1.55099e-13 2.48007e-14) Threshold = 1e-06 OK. Max cell openness = 3.30422e-16 OK. Max aspect ratio = 555.656 OK. Minumum face area = 3.99642e-12. Maximum face area = 4.50651e-07. Face area magnitudes OK. Min volume = 2.66428e-16. Max volume = 3.00434e-11. Total volume = 8.99608e-06. Cell volumes OK. Mesh non-orthogonality Max: 43.0859 average: 6.23771 Threshold = 70 Non-orthogonality check OK. Face pyramids OK. Max skewness = 2.11452 OK. Mesh OK. End fvSchemes: ddtSchemes { default backward; } gradSchemes { default Gauss linear; grad(p) Gauss linear; grad(U) Gauss linear; } divSchemes { default none; div(phi,U) Gauss linear; div(phi,k) Gauss limitedLinear 1; div(phi,B) Gauss limitedLinear 1; div(phi,nuTilda) Gauss limitedLinear 1; div(B) Gauss linear; div((nuEff*dev(grad(U).T()))) Gauss linear; } laplacianSchemes { default none; laplacian(nuEff,U) Gauss linear corrected; laplacian((1|A(U)),p) Gauss linear corrected; laplacian(DkEff,k) Gauss linear corrected; laplacian(DBEff,B) Gauss linear corrected; laplacian(DnuTildaEff,nuTilda) Gauss linear corrected; } interpolationSchemes { default linear; interpolate(U) linear; } snGradSchemes { default corrected; } fluxRequired { default no; p ; } fvSolution: FoamFile { version 2.0; format ascii; class dictionary; location "system"; object fvSolution; } // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * // solvers { p { solver PCG; preconditioner DIC; tolerance 1e-06; relTol 0.05; } pFinal { solver PCG; preconditioner DIC; tolerance 1e-06; relTol 0; } U { solver PBiCG; preconditioner DILU; tolerance 1e-05; relTol 0; } k { solver PBiCG; preconditioner DILU; tolerance 1e-05; relTol 0; } B { solver PBiCG; preconditioner DILU; tolerance 1e-05; relTol 0; } nuTilda { solver PBiCG; preconditioner DILU; tolerance 1e-05; relTol 0; } } PISO { nCorrectors 2; nNonOrthogonalCorrectors 0; } one of the decomposeParDicts: numberOfSubdomains 24; method hierarchical; simpleCoeffs { n (2 1 2); delta 0.001; } hierarchicalCoeffs { n (4 2 3); delta 0.001; order xzy; } controlDict: application pisoFoam; startFrom startTime; startTime 0; stopAt endTime; endTime 1; deltaT 0.0000005; writeControl timeStep; writeInterval 2000; purgeWrite 0; writeFormat ascii; writePrecision 6; writeCompression uncompressed; timeFormat general; timePrecision 6; runTimeModifiable yes; functions ( forces { type forceCoeffs; functionObjectLibs ( "libforces.so" ); outputControl timeStep; outputInterval 2000; patches ( PLANE ); directForceDensity no; pName p; UName U; rhoName rhoInf; //log true; rhoInf 1000; CofR ( 0 0 0 ); liftDir ( 0 1 0 ); //y direction dragDir ( 1 0 0 ); //x direction pitchAxis ( 0 0 0 ); magUInf 0.39; //z direction lRef 1; Aref 3.14; // rhoRef 1; } fieldAverage1 { type fieldAverage; functionObjectLibs ("libfieldFunctionObjects.so"); enabled true; outputControl outputTime; fields ( U { mean on; prime2Mean on; base time; } p { mean on; prime2Mean on; base time; } ); } ); Last edited by HuJG; April 21, 2019 at 09:50. Reason: forget to submit some detail of the question |
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April 22, 2019, 23:15 |
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#2 |
New Member
Join Date: Apr 2019
Location: China,beijing
Posts: 4
Rep Power: 7 |
I found an answer with the similar question of mine.
parallel run is slower than serial run (pimpleFoam) !!! I have tried using GAMG instead of PCG for calculating pressure in fvScheme and found it worked well in parallel running. |
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Tags |
calculating time, parallel calculation |
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