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problem during mpi in server: expected Scalar, found on line 0 the word 'nan'

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Old   April 9, 2015, 06:12
Default problem during mpi in server: expected Scalar, found on line 0 the word 'nan'
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mohammed musthafa
Join Date: Dec 2014
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am getting an error as given below while running in parallel in server.please help me to solve this

Code:
Warning: Permanently added 'aggra581,90.3.3.181' (RSA) to the list of known hosts.
[8] 
[8] 
[8] --> FOAM FATAL IO ERROR: 
[8] wrong token type - expected Scalar, found on line 0 the word 'nan'
[8] 
[10] 
[10] 
[10] --> FOAM FATAL IO ERROR: 
[10] wrong token type - expected Scalar, found on line 0 the word 'nan'
[10] 
[10] file: /home/usr1803/rakeshc/cases/pcis/processor10/system/data.solverPerformance.p_rgh at line 0.
[11] 
[11] 
[11] --> FOAM FATAL IO ERROR: 
[11] wrong token type - expected Scalar, found on line 0 the word 'nan'
[11] 
[11] file: /home/usr1803/rakeshc/cases/pcis/processor11/system/data.solverPerformance.p_rgh at line 0.
[11] 
[11]     From function operator>>(Istream&, Scalar&)
[11]     in file [0] 
[0] 
[0] --> FOAM FATAL IO ERROR: 
[0] wrong token type - expected Scalar, found on line 0 the word 'nan'
[0] 
[0] file: /home/usr1803/rakeshc/cases/pcis/processor0/system/data.solverPerformance.p_rgh at line 0.
[0] 
[0]     From function operator>>(Istream&, Scalar&)
[0]     in file lnInclude/Scalar.C at line 91.
[0] 
FOAM parallel run exiting
[0] 
[3] 
[3] 
[3] --> FOAM FATAL IO ERROR: 
[3] wrong token type - expected Scalar, found on line 0 the word 'nan'
[3] 
[3] file: /home/usr1803/rakeshc/cases/pcis/processor3/system/data.solverPerformance.p_rgh at line 0.
[3] 
[3]     From function operator>>(Istream&, Scalar&)
[3]     in file lnInclude/Scalar.C at line 91.
[3] 
FOAM parallel run exiting
[3] 
[4] 
[4] 
[4] --> FOAM FATAL IO ERROR: 
[4] wrong token type - expected Scalar, found on line 0 the word 'nan'
[4] 
[4] file: /home/usr1803/rakeshc/cases/pcis/processor4/system/data.solverPerformance.p_rgh at line 0.
[4] 
[4]     From function operator>>(Istream&, Scalar&)
[4]     in file lnInclude/Scalar.C at line 91.
[4] 
FOAM parallel run exiting
[4] 
[16] 
[16] 
[16] --> FOAM FATAL IO ERROR: 
[16] wrong token type - expected Scalar, found on line 0 the word 'nan'
[16] 
[16] file: /home/usr1803/rakeshc/cases/pcis/processor16/system/data.solverPerformance.p_rgh at line 0.
[16] [1] 
[1] 
[1] --> FOAM FATAL IO ERROR: 
[1] wrong token type - expected Scalar, found on line 0 the word 'nan'
[1] 
[1] file: /home/usr1803/rakeshc/cases/pcis/processor1/system/data.solverPerformance.p_rgh at line 0.
[1] 
[1]     From function operator>>(Istream&, Scalar&)
[1]     in file lnInclude/Scalar.C at line 91.
[1] 
FOAM parallel run exiting
[1] 
[2] 
[2] 
[2] --> FOAM FATAL IO ERROR: 
[2] wrong token type - expected Scalar, found on line 0 the word 'nan'
[2] 
[2] file: /home/usr1803/rakeshc/cases/pcis/processor2/system/data.solverPerformance.p_rgh at line 0.
[2] 
[2]     From function operator>>(Istream&, Scalar&)
[2]     in file lnInclude/Scalar.C at line 91.
[2] 
FOAM parallel run exiting
[2] 
[5] 
[5] 
[5] --> FOAM FATAL IO ERROR: 
[5] wrong token type - expected Scalar, found on line 0 the word 'nan'
[5] 
[5] file: /home/usr1803/rakeshc/cases/pcis/processor5/system/data.solverPerformance.p_rgh at line 0.
[5] 
[5]     From function operator>>(Istream&, Scalar&)
[5]     in file lnInclude/Scalar.C at line 91.
[5] 
FOAM parallel run exiting
[5] 
[6] 
[6] 
[6] --> FOAM FATAL IO ERROR: 
[6] wrong token type - expected Scalar, found on line 0 the word 'nan'
[6] 
[6] file: /home/usr1803/rakeshc/cases/pcis/processor6/system/data.solverPerformance.p_rgh at line 0.
[6] 
[6]     From function operator>>(Istream&, Scalar&)
[6]     in file lnInclude/Scalar.C at line 91.
[6] 
FOAM parallel run exiting
[6] 
lnInclude/Scalar.C at line 91.
[11] 
FOAM parallel run exiting
[11] 
[9] 
[9] 
[9] --> FOAM FATAL IO ERROR: 
[9] wrong token type - expected Scalar, found on line 0 the word 'nan'
[9] 
[9] file: /home/usr1803/rakeshc/cases/pcis/processor9/system/data.solverPerformance.p_rgh at line 0.
[9] 
[9]     From function operator>>(Istream&, Scalar&)
[9]     in file lnInclude/Scalar.C at line 91.
[9] 
FOAM parallel run exiting
[9] 
[8] file: /home/usr1803/rakeshc/cases/pcis/processor8/system/data.solverPerformance.p_rgh at line 0.
[8] 
[8]     From function operator>>(Istream&, Scalar&)
[8]     in file lnInclude/Scalar.C at line 91.
[8] 
FOAM parallel run exiting
[8] 
[10] 
[10]     From function operator>>(Istream&, Scalar&)
[10]     in file lnInclude/Scalar.C at line 91.
[10] 
FOAM parallel run exiting
[10] 
[17] 
[17] 
[17] --> FOAM FATAL IO ERROR: 
[17] wrong token type - expected Scalar, found on line 0 the word 'nan'
[17] 
[17] file: /home/usr1803/rakeshc/cases/pcis/processor17/system/data.solverPerformance.p_rgh at line 0.
[17] 
[17]     From function operator>>(Istream&, Scalar&)
[17]     in file lnInclude/Scalar.C at line 91.
[17] 
FOAM parallel run exiting
[17] 
[18] 
[18] 
[18] --> FOAM FATAL IO ERROR: 
[18] wrong token type - expected Scalar, found on line 0 the word 'nan'
[18] 
[18] file: /home/usr1803/rakeshc/cases/pcis/processor18/system/data.solverPerformance.p_rgh at line 0.
[18] 
[18]     From function operator>>(Istream&, Scalar&)
[18]     in file lnInclude/Scalar.C at line 91.
[18] 
FOAM parallel run exiting
[18] 
[19] 
[19] 
[19] --> FOAM FATAL IO ERROR: 
[19] wrong token type - expected Scalar, found on line 0 the word 'nan'
[19] 
[19] file: /home/usr1803/rakeshc/cases/pcis/processor19/system/data.solverPerformance.p_rgh at line 0.
[19] 
[19]     From function operator>>(Istream&, Scalar&)
[19]     in file lnInclude/Scalar.C at line 91.
[19] 
FOAM parallel run exiting
[19] 
[20] 
[20] 
[20] --> FOAM FATAL IO ERROR: 
[20] wrong token type - expected Scalar, found on line 0 the word 'nan'
[20] 
[20] file: /home/usr1803/rakeshc/cases/pcis/processor20/system/data.solverPerformance.p_rgh at line 0.
[20] 
[20]     From function operator>>(Istream&, Scalar&)
[20]     in file lnInclude/Scalar.C at line 91.
[20] 
FOAM parallel run exiting
[20] 
[7] [21] 
[21] 
[21] --> FOAM FATAL IO ERROR: 
[21] wrong token type - expected Scalar, found on line 0 the word 'nan'
[21] 
[21] file: /home/usr1803/rakeshc/cases/pcis/processor21/system/data.solverPerformance.p_rgh at line 0.
[21] 
[21]     From function operator>>(Istream&, Scalar&)
[21]     in file lnInclude/Scalar.C at line 91.
[21] 
FOAM parallel run exiting
[21] 

[7] 
[7] --> FOAM FATAL IO ERROR: 
[7] wrong token type - expected Scalar, found on line 0 the word 'nan'[22] 
[22] 
[22] --> FOAM FATAL IO ERROR: 
[22] wrong token type - expected Scalar, found on line 0 the word 'nan'
[22] 
[22] file: /home/usr1803/rakeshc/cases/pcis/processor22/system/data.solverPerformance.p_rgh at line 0.
[22] 
[22]     From function operator>>(Istream&, Scalar&)
[22]     in file lnInclude/Scalar.C at line 91.
[22] 
FOAM parallel run exiting
[22] 

[7] 
[7] file: /home/usr1803/rakeshc/cases/pcis/processor7/system/data.solverPerformance.p_rgh at line 0.
[7] 
[7]     From function operator>>(Istream&, Scalar&)
[7]     in file [23] 
[23] 
[23] --> FOAM FATAL IO ERROR: 
[23] wrong token type - expected Scalar, found on line 0 the word 'nan'
[23] 
[23] file: /home/usr1803/rakeshc/cases/pcis/processor23/system/data.solverPerformance.p_rgh at line 0.
[23] 
[23]     From function operator>>(Istream&, Scalar&)
[23]     in file lnInclude/Scalar.C at line 91.
[23] 
FOAM parallel run exiting
[23] 
[12] 
[12] 
[12] --> FOAM FATAL IO ERROR: 
[12] wrong token type - expected Scalar, found on line 0 the word 'nan'
[12] 
[12] file: /home/usr1803/rakeshc/cases/pcis/processor12/system/data.solverPerformance.p_rgh at line 0.
[12] 
[12]     From function operator>>(Istream&, Scalar&)
[12]     in file lnInclude/Scalar.C at line 91.
[12] 
FOAM parallel run exiting
[12] 
lnInclude/Scalar.C at line 91.
[7] 
FOAM parallel run exiting
[7] 
[13] [14] 
[14] 
[14] --> FOAM FATAL IO ERROR: 
[14] wrong token type - expected Scalar, found on line 0 the word 'nan'
[14] 
[14] file: /home/usr1803/rakeshc/cases/pcis/processor14/system/data.solverPerformance.p_rgh at line 0.
[14] 
[14]     From function operator>>(Istream&, Scalar&)
[14]     in file lnInclude/Scalar.C at line 91.
[14] 
FOAM parallel run exiting
[14] 
[15] 
[15] 
[15] --> FOAM FATAL IO ERROR: 
[15] wrong token type - expected Scalar, found on line 0 the word 'nan'
[15] 
[15] file: /home/usr1803/rakeshc/cases/pcis/processor15/system/data.solverPerformance.p_rgh at line 0.
[15] 
[15]     From function operator>>(Istream&, Scalar&)
[15]     in file lnInclude/Scalar.C at line 91.
[15] 
FOAM parallel run exiting
[15] 

[16]     From function operator>>(Istream&, Scalar&)
[16]     in file lnInclude/Scalar.C at line 91.
[16] 
FOAM parallel run exiting
[16] 

[13] 
[13] --> FOAM FATAL IO ERROR: 
[13] wrong token type - expected Scalar, found on line 0 the word 'nan'
[13] 
[13] file: /home/usr1803/rakeshc/cases/pcis/processor13/system/data.solverPerformance.p_rgh at line 0.
[13] 
[13]     From function operator>>(Istream&, Scalar&)
[13]     in file lnInclude/Scalar.C at line 91.
[13] 
FOAM parallel run exiting
[13] 
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 3 in communicator MPI_COMM_WORLD 
with errorcode 1.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------
[aggra583.compunet.barc.in:15230] 23 more processes have sent help message help-mpi-api.txt / mpi-abort
[aggra583.compunet.barc.in:15230] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
Warning: Permanently added 'aggra583,90.3.3.183' (RSA) to the list of known hosts.

Last edited by wyldckat; April 9, 2015 at 16:59. Reason: Added [CODE][/CODE]
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Old   April 9, 2015, 17:08
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  #2
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Bruno Santos
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wyldckat is a name known to allwyldckat is a name known to allwyldckat is a name known to allwyldckat is a name known to allwyldckat is a name known to allwyldckat is a name known to all
Greetings muth and welcome to posting on the forum!

The error message seems to be clear enough that a "nan" value has been read from a file. As for what "nan" means: http://en.wikipedia.org/wiki/NaN

Beyond this, it's almost impossible to deduce what went wrong. Please follow these instructions: http://www.cfd-online.com/Forums/ope...-get-help.html

Best regards,
Bruno
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Old   April 10, 2015, 06:42
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  #3
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mohammed musthafa
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thank you for your kind suggestion.
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Old   August 27, 2018, 05:18
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  #4
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This error arises in non-MPI problems as well and the reducing the deltaT in controlDict seems to resolve the issue. I learned this from here.
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