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Old   June 10, 2015, 14:05
Default checkMesh / mesh errors
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Andrew
Join Date: Feb 2015
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Has anyone come across an error like this, or have suggestions for how to fix it?

Quote:
/*---------------------------------------------------------------------------*\
| ========= | |
| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
| \\ / O peration | Version: 2.3.0 |
| \\ / A nd | Web: www.OpenFOAM.org |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
Build : 2.3.0-f5222ca19ce6
Exec : checkMesh -case CFD -allGeometry -allTopology
Date : Jun 10 2015
Time : 12:53:06
Host : "andrew-VirtualBox"
PID : 6812
Case : ./CFD
nProcs : 1
sigFpe : Enabling floating point exception trapping (FOAM_SIGFPE).
fileModificationChecking : Monitoring run-time modified files using timeStampMaster
allowSystemOperations : Disallowing user-supplied system call operations

// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
Create time

Create polyMesh for time = 0

Enabling all (cell, face, edge, point) topology checks.

Enabling all geometry checks.

Time = 0

Mesh stats
points: 33384
faces: 95060
internal faces: 90340
cells: 30900
faces per cell: 6
boundary patches: 3
point zones: 4
face zones: 12
cell zones: 5

Overall number of cells of each type:
hexahedra: 30900
prisms: 0
wedges: 0
pyramids: 0
tet wedges: 0
tetrahedra: 0
polyhedra: 0

Checking topology...
Boundary definition OK.
Cell to face addressing OK.
Point usage OK.
Upper triangular ordering OK.
Face vertices OK.
Topological cell zip-up check OK.
Face-face connectivity OK.
Number of regions: 1 (OK).

Checking patch topology for multiply connected surfaces...
Patch Faces Points Surface topology Bounding box
walls 2200 2274 ok (non-closed singly connected) (-0.01905 -0.01905 -0.0179605) (0.01905 0.01905 0.170361)
surf1a 300 354 ok (non-closed singly connected) (-0.01905 -0.01905 0.1524) (0.0134704 0.0134704 0.170361)
surf6b 300 355 ok (non-closed singly connected) (-0.00449013 -0.0134704 -0.0687605) (0.01905 0.01905 0.170361)

Checking geometry...
Overall domain bounding box (-0.01905 -0.01905 -0.0687605) (0.01905 0.01905 0.221161)
Mesh (non-empty, non-wedge) directions (1 1 1)
Mesh (non-empty) directions (1 1 1)
Boundary openness (-6.82138e-17 -1.30307e-16 4.22837e-17) OK.
Max cell openness = 2.4042e-16 OK.
Max aspect ratio = 12.2252 OK.
Minimum face area = 4.76604e-08. Maximum face area = 1.30162e-05. Face area magnitudes OK.
Min volume = 1.50962e-10. Max volume = 2.51715e-08. Total volume = 0.000208843. Cell volumes OK.
Mesh non-orthogonality Max: 59.6832 average: 13.8199
Non-orthogonality check OK.
Face pyramids OK.
Max skewness = 1.37206 OK.
Coupled point location match (average 0) OK.
#0 Foam::error:rintStack(Foam::Ostream&) at ??:?
#1 Foam::sigSegv::sigHandler(int) at ??:?
#2 Uninterpreted:
#3 Foam:olyMeshTetDecomposition::checkFaceTets(Foam :olyMesh const&, double, bool, Foam::HashSet<int, Foam::Hash<int> >*) at ??:?
#4
at ??:?
#5
at ??:?
#6 __libc_start_main in "/lib/i386-linux-gnu/libc.so.6"
#7
at ??:?
./checkMesh.sh: line 5: 6812 Segmentation fault (core dumped) checkMesh -case CFD -allGeometry -allTopology
andrew@andrew-VirtualBox:~/OpenFOAM/andrew-2.3.0/run/andy$
I'm running checkMesh (
Quote:
checkMesh -allGeometry -allTopology
) to debug this invalid face error that I get when running decomposePar before a parallel simulation. I also find it curious that checkMesh reports that I have 95060 faces, when the invalid face error says the max face index is 24341... I can upload/link any files needed.

Quote:
/*---------------------------------------------------------------------------*\
| ========= | |
| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
| \\ / O peration | Version: 2.3.0 |
| \\ / A nd | Web: www.OpenFOAM.org |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
Build : 2.3.0-f5222ca19ce6
Exec : decomposePar
Date : Jun 10 2015
Time : 12:57:35
Host : "andrew-VirtualBox"
PID : 7639
Case : /home/andrew/OpenFOAM/andrew-2.3.0/run/andy/CFD
nProcs : 1
sigFpe : Enabling floating point exception trapping (FOAM_SIGFPE).
fileModificationChecking : Monitoring run-time modified files using timeStampMaster
allowSystemOperations : Disallowing user-supplied system call operations

// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
Create time



Decomposing mesh region0

Create mesh

Calculating distribution of cells
Selecting decompositionMethod hierarchical

Finished decomposition in 0.04 s

Calculating original mesh data

Distributing cells to processors

Distributing faces to processors

Distributing points to processors

Constructing processor meshes


--> FOAM FATAL ERROR:
Cell 5199contains face labels out of range: 6(14635 14636 22923 -1 23988 14632) Max face index = 24341

From function polyMesh:olyMesh
(
const IOobject&,
const Xfer<pointField>&,
const Xfer<faceList>&,
const Xfer<cellList>&
)

in file meshes/polyMesh/polyMesh.C at line 654.

FOAM aborting

Last edited by andybond13; June 10, 2015 at 14:09. Reason: more specific about checkMesh command.
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