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[blockMesh] FOAM FATAL ERROR: face 0 in patch 0 does not have neighbour cell face |
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July 11, 2015, 13:51 |
face 0 in patch 4 does not have neighbour cell face: 4(26 27 28 29)
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#21 |
Member
AJAY BHANDARI
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Hi all,
I am new to openFoam. I am having the same problem as described above in threads. below is my blockMeshDict file. Basically my geometry is cuboid of dimension 20*10*1 (all dimensions are in mm). Within it is enclosed two concentric circles of radius 4mm and 2mm. Basically the concentric circles are blocked according to hagen poiusselii flow. the circles are at the centre of cuboid and origin starts from there. convertToMeters 0.001; vertices ( (0 0 0) //0 (0.5 0.5 0) //1 (-0.5 0.5 0) //2 (-0.5 -0.5 0) //3 (0.5 -0.5 0) //4 (1.414 1.414 0) //5 (-1.414 1.414 0) //6 (-1.414 -1.414 0) //7 (1.414 -1.414 0) //8 (2.828 2.828 0) //9 (-2.828 2.828 0) //10 (-2.828 -2.828 0) //11 (2.828 -2.828 0) //12 (0.5 0.5 1) //13 (-0.5 0.5 1) //14 (-0.5 -0.5 1) //15 (0.5 -0.5 1) //16 (1.414 1.414 1) //17 (-1.414 1.414 1) //18 (-1.414 -1.414 1) //19 (1.414 -1.414 1) //20 (2.828 2.828 1) //21 (-2.828 2.828 1) //22 (-2.828 -2.828 1) //23 (2.828 -2.828 1) //24 (0 0 1) //25 (-10 -5 0) //26 (10 -5 0) //27 (10 5 0) //28 (-10 5 0) //29 (-10 -5 1) //30 (10 -5 1) //31 (10 5 1) //32 (-10 5 1) //33 ); blocks ( hex (1 2 3 4 13 14 15 16) porosity (15 10 1) simpleGrading (0.104 0.077 1) hex (1 5 6 2 13 17 18 14) porosity14 (15 10 1) simpleGrading (0.104 0.077 1) hex (2 6 7 3 14 18 19 15) porosity15 (15 10 1) simpleGrading (0.104 0.077 1) hex (3 7 8 4 15 19 20 16) porosity16 (15 10 1) simpleGrading (0.104 0.077 1) hex (4 8 5 1 16 20 17 13) porosity17 (15 10 1) simpleGrading (0.104 0.077 1) hex (5 9 10 6 17 21 22 18) porosity18 (15 10 1) simpleGrading (0.104 0.077 1) hex (6 10 11 7 18 22 23 19) porosity19 (15 10 1) simpleGrading (0.104 0.077 1) hex (7 11 12 8 19 23 24 20) porosity20 (15 10 1) simpleGrading (0.104 0.077 1) hex (12 9 5 8 24 21 17 20) porosity21 (15 10 1) simpleGrading (0.104 0.077 1) hex (9 28 29 10 21 32 33 22) porosity22 (15 10 1) simpleGrading (0.104 0.077 1) hex (10 29 26 11 22 33 30 23) porosity23 (15 10 1) simpleGrading (0.104 0.077 1) hex (11 26 27 12 23 30 31 24) porosity24 (15 10 1) simpleGrading (0.104 0.077 1) hex (12 27 28 9 24 31 32 21) porosity25 (15 10 1) simpleGrading (0.104 0.077 1) ); edges ( arc 5 6 (0 2 0) arc 6 7 (-2 0 0) arc 7 8 (0 -2 0) arc 8 5 (2 0 0) arc 9 10 (0 4 0) arc 10 11 (-4 0 0) arc 11 12 (0 -4 0) arc 12 9 (4 0 0) arc 17 18 (0 2 1) arc 18 19 (-2 0 1) arc 19 20 (0 -2 1) arc 20 17 (2 0 1) arc 21 22 (0 4 1) arc 22 23 (-4 0 1) arc 23 24 (0 -4 1) arc 24 21 (4 0 1) ); boundary ( inlet { type inlet; faces ( (26 29 33 30) ); } outlet { type outlet; faces ( (27 31 32 28) ); } top { type wall; faces ( (29 28 32 33) ); } bottom { type wall; faces ( (26 30 31 27) ); } frontAndBack { type empty; faces ( (26 27 28 29) (31 30 33 32) ); } ); mergePatchPairs ( ); Plz suggest me where is the error??? |
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July 11, 2015, 18:49 |
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#22 |
Member
Alexander Bartel
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Hi Ajay,
could you draw a sketch of your geometry and post your log with the error message? regards Alex
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July 12, 2015, 02:26 |
face 0 in patch 4 does not have neighbouring face (26 27 28 29
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#23 |
Member
AJAY BHANDARI
Join Date: Jul 2015
Location: INDIA
Posts: 57
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Hi alex, First of all thanks for your reply. i have drawn a rough sketch of my geometry with dimensions. I am attaching it with this. Its basically a cuboid of dimension 20mm*10mm*1mm. with two concentric circles within it one of radius 2mm and other of radius 4mm. I have kept front and back faces empty because i want a 2D simulation. The circles back face and front face images are also attached for clearity. Basically it will become annular cylinder when viewed in 3D. I have already posted my BlockMeshDict file. Its showing error that face 0 in patch 4 does not have neighbouring face (26 27 28 29). Please suggest now. Any more information you want about the geometry please tell. |
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July 12, 2015, 02:37 |
How to assign different transport properties for different zones in porousSimpleFoam
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#24 |
Member
AJAY BHANDARI
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Hi Alex,
One more thing i want to tell is that basically i am simulating a fluid flow through a body tissue which is basically a porous media. the two concentric circles are basically tumor and necrotic core which are different regions and rest all space that is cuboid excluding the two circles is normal tissue. all the three regions have same porosity but different transport properties. I am using porousSimpleFoam for this. In that I have changed the Peqn.H file and added some source and sink terms which have lot of constants and all are declared in transport properties. All the three regions which i have described above have different transport properties. My problem is can u tell me how to assign different transport properties for these three regions which u can see in my figure attached in previous post and where??? Any kind of help will be appreciated..If anything u want to know more about this problem plzz let me know.... Regards Ajay |
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July 12, 2015, 17:04 |
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#25 |
Member
Alexander Bartel
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Hi Ajay,
I see one problem... you have just defined 2 empty faces for frontAndBack, but if you try to set up a two-dimensional every defined block has two empty faces which have to be defined properly. regards Alex
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July 13, 2015, 01:53 |
face 0 in patch 4 does not have neighbouring face (26 27 28 29
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#26 |
Member
AJAY BHANDARI
Join Date: Jul 2015
Location: INDIA
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Hi Alex,
Thanks for your reply again. But i couldn't get that. Where i have to define that block empty faces??? Could you please elaborate???or point out in the BlockMeshDict file. |
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July 13, 2015, 10:47 |
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#27 | |
Senior Member
Alex
Join Date: Oct 2013
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Quote:
you only defined 2 empty faces when you really have 2 empty faces per block created, in your geometry it would be like 26 empty faces I think... I haven't checked the whole blockMeshDict definitiion, but at least this is an important mistake... Correct it and try again! Best regards, Alex
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Web site where I present my Master's Thesis: foamingtime.wordpress.com The case I talk about in this site was solved with chtMultiRegionSimpleFoam solver and involves radiation. Some basic tutorials are also resolved step by step in the web. If you are interested in these matters, you are invited to come in! |
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July 13, 2015, 11:00 |
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#28 |
Member
Alexander Bartel
Join Date: Feb 2015
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Code:
blocks ( hex (1 2 3 4 13 14 15 16) porosity (15 10 1) simpleGrading (0.104 0.077 1) hex (1 5 6 2 13 17 18 14) porosity14 (15 10 1) simpleGrading (0.104 0.077 1) hex (2 6 7 3 14 18 19 15) porosity15 (15 10 1) simpleGrading (0.104 0.077 1) hex (3 7 8 4 15 19 20 16) porosity16 (15 10 1) simpleGrading (0.104 0.077 1) hex (4 8 5 1 16 20 17 13) porosity17 (15 10 1) simpleGrading (0.104 0.077 1) hex (5 9 10 6 17 21 22 18) porosity18 (15 10 1) simpleGrading (0.104 0.077 1) hex (6 10 11 7 18 22 23 19) porosity19 (15 10 1) simpleGrading (0.104 0.077 1) hex (7 11 12 8 19 23 24 20) porosity20 (15 10 1) simpleGrading (0.104 0.077 1) hex (12 9 5 8 24 21 17 20) porosity21 (15 10 1) simpleGrading (0.104 0.077 1) hex (9 28 29 10 21 32 33 22) porosity22 (15 10 1) simpleGrading (0.104 0.077 1) hex (10 29 26 11 22 33 30 23) porosity23 (15 10 1) simpleGrading (0.104 0.077 1) hex (11 26 27 12 23 30 31 24) porosity24 (15 10 1) simpleGrading (0.104 0.077 1) hex (12 27 28 9 24 31 32 21) porosity25 (15 10 1) simpleGrading (0.104 0.077 1) ); instead of: frontAndBack { type empty; faces ( (26 27 28 29) (31 30 33 32) ); } write: (example for your first block, go on with your other blocks defined under blocks) frontAndBack { type empty; faces ( ( 1 2 3 4) //hex (1 2 3 4 13 14 15 16) porosity (15 10 1) simpleGrading (0.104 0.0771) (13 14 15 16) ); } ); Alex
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July 13, 2015, 12:59 |
face 0 in patch 4 does not have neighbour cell face: 4(26 27 28 29)
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#29 |
Member
AJAY BHANDARI
Join Date: Jul 2015
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Posts: 57
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Hi alex,
Thanks for your reply. error has been removed. I did exactly as you suggested and created 26 empty faces. But unfortunately one more error is coming now. See Create time Creating block mesh from "/home/ajay/OpenFOAM/ajay-2.4.0/run/tutorials/incompressible/porousSimpleFoam/tumormagdoom/constant/polyMesh/blockMeshDict" Creating curved edges Creating topology blocks Creating topology patches Creating block mesh topology Check topology Basic statistics Number of internal faces : 24 Number of boundary faces : 30 Number of defined boundary faces : 30 Number of undefined boundary faces : 0 Checking patch -> block consistency Creating block offsets Creating merge list --> FOAM FATAL ERROR: Inconsistent number of faces between block pair 0 and 1 From function blockMesh::calcMergeInfo() in file blockMesh/blockMeshMerge.C at line 221. FOAM exiting. Plz suggest where is the error now. |
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July 13, 2015, 13:40 |
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#30 |
Member
AJAY BHANDARI
Join Date: Jul 2015
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Posts: 57
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Hi alex,
Finally its done.. But its not running when my blockMeshDict is this hex (1 2 3 4 13 14 15 16) porosity (15 10 1) simpleGrading (0.104 0.077 1) hex (1 5 6 2 13 17 18 14) porosity14 (15 10 1) simpleGrading (0.104 0.077 1) hex (2 6 7 3 14 18 19 15) porosity15 (15 10 1) simpleGrading (0.104 0.077 1) hex (3 7 8 4 15 19 20 16) porosity16 (15 10 1) simpleGrading (0.104 0.077 1) hex (4 8 5 1 16 20 17 13) porosity17 (15 10 1) simpleGrading (0.104 0.077 1) hex (5 9 10 6 17 21 22 18) porosity18 (15 10 1) simpleGrading (0.104 0.077 1) hex (6 10 11 7 18 22 23 19) porosity19 (15 10 1) simpleGrading (0.104 0.077 1) hex (7 11 12 8 19 23 24 20) porosity20 (15 10 1) simpleGrading (0.104 0.077 1) hex (12 9 5 8 24 21 17 20) porosity21 (15 10 1) simpleGrading (0.104 0.077 1) hex (9 28 29 10 21 32 33 22) porosity22 (15 10 1) simpleGrading (0.104 0.077 1) hex (10 29 26 11 22 33 30 23) porosity23 (15 10 1) simpleGrading (0.104 0.077 1) hex (11 26 27 12 23 30 31 24) porosity24 (15 10 1) simpleGrading (0.104 0.077 1) hex (12 27 28 9 24 31 32 21) porosity25 (15 10 1) simpleGrading (0.104 0.077 1) But it runs when i change grading hex (1 2 3 4 13 14 15 16) porosity (10 10 1) simpleGrading (1 1 1) hex (1 5 6 2 13 17 18 14) porosity (10 10 1) simpleGrading (1 1 1) hex (2 6 7 3 14 18 19 15) porosity (10 10 1) simpleGrading (1 1 1) hex (3 7 8 4 15 19 20 16) porosity (10 10 1) simpleGrading (1 1 1) hex (4 8 5 1 16 20 17 13) porosity (10 10 1) simpleGrading (1 1 1) hex (5 9 10 6 17 21 22 18) porosity (10 10 1) simpleGrading (1 1 1) hex (6 10 11 7 18 22 23 19) porosity (10 10 1) simpleGrading (1 1 1) hex (7 11 12 8 19 23 24 20) porosity (10 10 1) simpleGrading (1 1 1) hex (12 9 5 8 24 21 17 20) porosity (10 10 1) simpleGrading (1 1 1) hex (9 28 29 10 21 32 33 22) porosity (10 10 1) simpleGrading (1 1 1) hex (10 29 26 11 22 33 30 23) inlet (10 10 1) simpleGrading (1 1 1) hex (11 26 27 12 23 30 31 24) porosity (10 10 1) simpleGrading (1 1 1) hex (12 27 28 9 24 31 32 21) outlet (10 10 1) simpleGrading (1 1 1) But i want former dict file So plz suggest what should i do??? |
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July 13, 2015, 18:36 |
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#31 | |
Member
Alexander Bartel
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As written in another thread
Quote:
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July 14, 2015, 12:38 |
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#32 |
Member
AJAY BHANDARI
Join Date: Jul 2015
Location: INDIA
Posts: 57
Rep Power: 11 |
Hi alex,
Thanks for your reply. I have read the user guide. I tried but failed. Basically I want 192 cells in x direction and 96 cells in y direction with spacing between each cell 0.104*0.104mm. Do i have to divide these cells by the no of blocks in each direction?? Plz suggest... Regards AJAY |
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July 14, 2015, 17:26 |
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#33 | |||
Member
Alexander Bartel
Join Date: Feb 2015
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Posts: 97
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Hi Ajay,
I see that I have to explain my last quote. Quote:
Quote:
I give you a new quote from the user guide: Quote:
For example your first block has the x-direction from point 1 to point 2 . But your second block has the x-direction from point 1 to point 5 . That is generally not a problem. But your grading leads to trouble. You have to choices: Define your second block like "hex (5 6 2 1 ....)" Or change the grading from (15 10 1) simpleGrading (0.104 0.077 1) to (10 15 1) simpleGrading (0.077 0.104 1) I hope it helps Alex
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July 15, 2015, 14:54 |
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#34 |
Member
AJAY BHANDARI
Join Date: Jul 2015
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Hi alex,
Thanks for your reply and for answering to my posts. I have understood what you are trying to say and i even changed the block numbering and simple grading as you said. I did many trials but its not working. Its giving same error. Could you please spend some of your precious time on my blockMesh dict file and tell me exactly where to change the grading or numbering of block. Here's the blockMesh dict file. convertToMeters 0.001; vertices ( (0 0 0) //0 (0.5 0.5 0) //1 (-0.5 0.5 0) //2 (-0.5 -0.5 0) //3 (0.5 -0.5 0) //4 (1.414 1.414 0) //5 (-1.414 1.414 0) //6 (-1.414 -1.414 0) //7 (1.414 -1.414 0) //8 (2.828 2.828 0) //9 (-2.828 2.828 0) //10 (-2.828 -2.828 0) //11 (2.828 -2.828 0) //12 (0.5 0.5 1) //13 (-0.5 0.5 1) //14 (-0.5 -0.5 1) //15 (0.5 -0.5 1) //16 (1.414 1.414 1) //17 (-1.414 1.414 1) //18 (-1.414 -1.414 1) //19 (1.414 -1.414 1) //20 (2.828 2.828 1) //21 (-2.828 2.828 1) //22 (-2.828 -2.828 1) //23 (2.828 -2.828 1) //24 (0 0 1) //25 (-10 -5 0) //26 (10 -5 0) //27 (10 5 0) //28 (-10 5 0) //29 (-10 -5 1) //30 (10 -5 1) //31 (10 5 1) //32 (-10 5 1) //33 ); blocks ( hex (1 2 3 4 13 14 15 16) porosity (10 10 1) simpleGrading (1 1 1) hex (1 5 6 2 13 17 18 14) porosity14 (10 10 1) simpleGrading (1 1 1) hex (2 6 7 3 14 18 19 15) porosity15 (10 10 1) simpleGrading (1 1 1) hex (3 7 8 4 15 19 20 16) porosity16 (10 10 1) simpleGrading (1 1 1) hex (4 8 5 1 16 20 17 13) porosity17 (10 10 1) simpleGrading (1 1 1) hex (5 9 10 6 17 21 22 18) porosity18 (10 10 1) simpleGrading (1 1 1) hex (6 10 11 7 18 22 23 19) porosity19 (10 10 1) simpleGrading (1 1 1) hex (7 11 12 8 19 23 24 20) porosity20 (10 10 1) simpleGrading (1 1 1) hex (12 9 5 8 24 21 17 20) porosity21 (10 10 1) simpleGrading (1 1 1) hex (9 28 29 10 21 32 33 22) porosity22 (10 10 1) simpleGrading (1 1 1) hex (10 29 26 11 22 33 30 23) porosity23 (10 10 1) simpleGrading (1 1 1) hex (11 26 27 12 23 30 31 24) porosity24 (10 10 1) simpleGrading (1 1 1) hex (12 27 28 9 24 31 32 21) porosity25 (10 10 1) simpleGrading (1 1 1) ); edges ( arc 5 6 (0 2 0) arc 6 7 (-2 0 0) arc 7 8 (0 -2 0) arc 8 5 (2 0 0) arc 9 10 (0 4 0) arc 10 11 (-4 0 0) arc 11 12 (0 -4 0) arc 12 9 (4 0 0) arc 17 18 (0 2 1) arc 18 19 (-2 0 1) arc 19 20 (0 -2 1) arc 20 17 (2 0 1) arc 21 22 (0 4 1) arc 22 23 (-4 0 1) arc 23 24 (0 -4 1) arc 24 21 (4 0 1) ); boundary ( inlet { type inlet; faces ( (26 30 33 29) ); } outlet { type outlet; faces ( (28 32 31 27) ); } top { type wall; faces ( (29 33 32 28) ); } bottom { type wall; faces ( (27 31 30 26) ); } frontAndBack { type empty; faces ( (1 2 3 4) //from first block (13 14 15 16) (1 5 6 2) //from second block (13 17 18 14) (2 6 7 3) //from third block (14 18 19 15) (3 7 8 4) //from fourth block (15 19 20 16) (4 8 5 1) //from fifth block (16 20 17 13) (5 9 10 6) //from sixth block (17 21 22 18) (6 10 11 7) //from seventh block (18 22 23 19) (7 11 12 8) //from eighth block (19 23 24 20) (12 9 5 8) //from ninth block (24 21 17 20) (9 28 29 10) //from tenth block (21 32 33 22) (10 29 26 11) //from eleventh block (22 33 30 23) (11 26 27 12) //from twelvth block (23 30 31 24) (12 27 28 9) //from thirteen block (24 31 32 21) ); } ); mergePatchPairs ( ); Basically i want total 192 cells in x dirn and 96 cells in y dirn. and spacing between each cell to be 0.104*0.104mm. How should i divide them in each block and where i should change???? |
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July 15, 2015, 17:54 |
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#35 | ||
Member
Alexander Bartel
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Hi Ajay,
in this post you say the last dict works. Quote:
And I have to ask one question: what do you mean with spacing between the cells? Quote:
Alex
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July 17, 2015, 02:00 |
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#36 |
Member
AJAY BHANDARI
Join Date: Jul 2015
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Hi alex,
Sry for my late reply. Actually i was wrong 0.104*0.104 mm is the cell dimension in x and y dirn. but in simple grading it is the cell expansion ratio so it will remain same that is (1 1 1) only. I tried changing no of grid points in x and y dirn step wise as you said . I did this hex (1 2 3 4 13 14 15 16) porosity (15 10 1) simpleGrading (1 1 1) hex (1 5 6 2 13 17 18 14) porosity14 (10 15 1) simpleGrading (1 1 1) hex (2 6 7 3 14 18 19 15) porosity15 (15 10 1) simpleGrading (1 1 1) hex (3 7 8 4 15 19 20 16) porosity16 (10 15 1) simpleGrading (1 1 1) By changing first three it didn,t give any error but when i change fourth one it gives error inconssitent no of patches between blocks 0 and 3 . So i think error is in fourth step... Can you help me out???? |
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July 17, 2015, 07:10 |
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#37 |
Member
Alexander Bartel
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looks fine so far,
perhaps test, hex (4 3 7 8 16 15 19 20) porosity16 (15 10 1) simpleGrading (1 1 1) regards Alex
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July 19, 2015, 12:31 |
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#38 |
Member
AJAY BHANDARI
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Thanks alex... it worked Thanks for your consistent help...
Regards AJAY |
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July 22, 2015, 11:04 |
Mesh is working, but it should not be (faces declaration are not correct)
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#39 |
Member
Lisandro Maders
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Hi,
I generated an axis-symmetric mesh with success. However, at one of the faces declaration the vertices are not clockwise oriented. All the other faces are clockwise oriented, but if I put this one as well it complains about having no neighbours. Then, when I inverted the order from clockwise to anti-clockwise it worked! Why? The face I am referring to is the face (3 5 2 3) from outlet. In my opinion, it should be (3 2 5 3). Here is my file: convertToMeters 0.001; vertices ( (0.0 0.0 0.0) //vertex 0 (24.904867 2.178893 0.0) //vertex 1 (24.904867 2.178893 137.0) //vertex 2 (0.0 0.0 137.0) //vertex 3 (24.904867 -2.178893 0.0) //vertex 4 (24.904867 -2.178893 137.0) //vertex 5 ); blocks ( hex (0 4 1 0 3 5 2 3) (20 2 100) simpleGrading (1 1 1) ); edges ( ); boundary ( air { type patch; faces ( (0 4 1 0) ); } outlet { type patch; faces ( (3 5 2 3) ); } fixedWall { type wall; faces ( (1 4 5 2) ); } front { type wedge; faces ( (0 1 2 3) ); } back { type wedge; faces ( (3 5 4 0) ); } axis { type empty; faces ( (0 3 3 0) ); } ); mergePatchPairs ( ); Any feedback I appreciate. Thanks in advance. Lisandro |
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July 22, 2015, 11:54 |
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#40 |
Member
Alexander Bartel
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Hi Lisandro,
I think you shouldn't let collapse one of the first 4 point, as they are used to define your local coordinate system of the block. Perhaps it solves your prob. regards Alex
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