CFD Online Logo CFD Online URL
www.cfd-online.com
[Sponsors]
Home > Forums > Software User Forums > OpenFOAM > OpenFOAM Installation

OpenFOAM-2.1.x on fedora 16 x86_64

Register Blogs Community New Posts Updated Threads Search

Reply
 
LinkBack Thread Tools Search this Thread Display Modes
Old   December 25, 2011, 11:53
Default OpenFOAM-2.1.x on fedora 16 x86_64
  #1
New Member
 
Anand Takawale
Join Date: Mar 2011
Location: Pune,India
Posts: 12
Rep Power: 15
anand_30 is on a distinguished road
Send a message via Skype™ to anand_30
Hi,I am trying to compile the sources of OpenFOAM obtained from git repo.
I am new to this fedora 16 environment,so getting lots of errors in installation.

I have sources at /opt/OpenFOAM/ .
I am installing as root,I followed complete steps provided by openfoam-git page,also got help from this page http://www.cfd-online.com/Forums/openfoam/94671-openfoam-2-0-x-fedora-16-64-bit.html

output of foamInstallationTest is as follows:-
Code:
Executing /opt/OpenFOAM/OpenFOAM-2.1.x/bin/foamInstallationTest:


Checking basic setup...
-------------------------------------------------------------------------------
Shell:              bash
Host:               fedora.lotus
OS:                 Linux version 3.1.6-1.fc16.x86_64
-------------------------------------------------------------------------------


Checking main OpenFOAM env variables...
-------------------------------------------------------------------------------
Environment_variable Set_to_file_or_directory                Valid      Crit
-------------------------------------------------------------------------------
$WM_PROJECT_INST_DIR /opt/OpenFOAM                            yes       yes
$WM_PROJECT_USER_DIR /home/anand/OpenFOAM/anand-2.1.x         yes       no
$WM_THIRD_PARTY_DIR  /opt/OpenFOAM/ThirdParty-2.1.x           yes       yes
-------------------------------------------------------------------------------


Checking the OpenFOAM env variables set on the PATH...
-------------------------------------------------------------------------------
Environment_variable Set_to_file_or_directory                Valid Path Crit
-------------------------------------------------------------------------------
$WM_PROJECT_DIR      /opt/OpenFOAM/OpenFOAM-2.1.x             yes  yes  yes

$FOAM_APPBIN         ...-2.1.x/platforms/linux64GccDPOpt/bin  yes  yes  yes
$FOAM_SITE_APPBIN    .../2.1.x/platforms/linux64GccDPOpt/bin  no        no
$FOAM_USER_APPBIN    ...-2.1.x/platforms/linux64GccDPOpt/bin  no        no
$WM_DIR              /opt/OpenFOAM/OpenFOAM-2.1.x/wmake       yes  yes  yes
-------------------------------------------------------------------------------


Checking the OpenFOAM env variables set on the LD_LIBRARY_PATH...
-------------------------------------------------------------------------------
Environment_variable Set_to_file_or_directory                Valid Path Crit
-------------------------------------------------------------------------------
$FOAM_LIBBIN         ...-2.1.x/platforms/linux64GccDPOpt/lib  yes   no  yes
$FOAM_SITE_LIBBIN    .../2.1.x/platforms/linux64GccDPOpt/lib  no        no
$FOAM_USER_LIBBIN    ...-2.1.x/platforms/linux64GccDPOpt/lib  no        no
$MPI_ARCH_PATH       ...x/platforms/linux64Gcc/openmpi-1.5.3  no        yes
-------------------------------------------------------------------------------


Third party software
-------------------------------------------------------------------------------
Software Version   Location 
-------------------------------------------------------------------------------
flex     2.5.35    /usr/bin/flex                                            
gcc      4.6.2     /usr/lib64/ccache/gcc                                    
gzip     1.4       /usr/bin/gzip                                            
tar      1.26      /bin/tar                                                 
icoFoam           
WARNING:  Conflicting installations:
          OpenFOAM settings        : /opt/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64GccDPOpt/bin/icoFoam
          current path             : 
          CRITICAL ERROR

-------------------------------------------------------------------------------


Summary
-------------------------------------------------------------------------------
Base configuration ok.
The foam installation contains 1 critical error(s).

Review the output for warning messages and consult
the installation guide for troubleshooting.

Done
Sorry forgot to make log file so the last output is

Code:
(.text._ZN4Foam8fvMatrixIdE5relaxEd[Foam::fvMatrix<double>::relax(double)]+0x5a4): undefined reference to `Foam::reduce(double&, Foam::sumOp<double> const&, int)'
Make/linux64GccDPOpt/twoPhaseEulerFoam.o: In function `Foam::fvMatrix<Foam::Vector<double> >::relax(double)':
twoPhaseEulerFoam.C:(.text._ZN4Foam8fvMatrixINS_6VectorIdEEE5relaxEd[Foam::fvMatrix<Foam::Vector<double> >::relax(double)]+0x854): undefined reference to `Foam::reduce(double&, Foam::sumOp<double> const&, int)'
Make/linux64GccDPOpt/twoPhaseEulerFoam.o: In function `Foam::GeometricField<Foam::SymmTensor<double>, Foam::fvPatchField, Foam::volMesh>::GeometricBoundaryField::evaluate()':
twoPhaseEulerFoam.C:(.text._ZN4Foam14GeometricFieldINS_10SymmTensorIdEENS_12fvPatchFieldENS_7volMeshEE22GeometricBoundaryField8evaluateEv[Foam::GeometricField<Foam::SymmTensor<double>, Foam::fvPatchField, Foam::volMesh>::GeometricBoundaryField::evaluate()]+0xf1): undefined reference to `Foam::UPstream::nRequests()'
twoPhaseEulerFoam.C:(.text._ZN4Foam14GeometricFieldINS_10SymmTensorIdEENS_12fvPatchFieldENS_7volMeshEE22GeometricBoundaryField8evaluateEv[Foam::GeometricField<Foam::SymmTensor<double>, Foam::fvPatchField, Foam::volMesh>::GeometricBoundaryField::evaluate()]+0x24f): undefined reference to `Foam::UPstream::waitRequests(int)'
/opt/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64GccDPOpt/lib/libmeshTools.so: undefined reference to `Foam::triSurface::triSurface(Foam::fileName const&)'
/opt/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64GccDPOpt/lib/libmeshTools.so: undefined reference to `Foam::triSurface::triSurface()'
/opt/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64GccDPOpt/lib/libOpenFOAM.so: undefined reference to `Foam::UIPstream::UIPstream(Foam::UPstream::commsTypes, int, Foam::DynamicList<char, 0u, 2u, 1u>&, int&, int, bool, Foam::IOstream::streamFormat, Foam::IOstream::versionNumber)'
/opt/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64GccDPOpt/lib/libmeshTools.so: undefined reference to `Foam::triSurface::scalePoints(double)'
/opt/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64GccDPOpt/lib/libmeshTools.so: undefined reference to `Foam::triSurface::triSurface(Foam::fileName const&)'
/opt/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64GccDPOpt/lib/libOpenFOAM.so: undefined reference to `Foam::UPstream::abort()'
/opt/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64GccDPOpt/lib/libmeshTools.so: undefined reference to `Foam::geometricSurfacePatch::operator==(Foam::geometricSurfacePatch const&) const'
/opt/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64GccDPOpt/lib/libmeshTools.so: undefined reference to `Foam::triSurface::subsetMesh(Foam::List<bool> const&, Foam::List<int>&, Foam::List<int>&) const'
/opt/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64GccDPOpt/lib/libmeshTools.so: undefined reference to `Foam::triSurface::edgeOwner() const'
/opt/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64GccDPOpt/lib/libmeshTools.so: undefined reference to `Foam::triSurface::triSurface(Foam::List<Foam::labelledTri> const&, Foam::List<Foam::geometricSurfacePatch> const&, Foam::Field<Foam::Vector<double> > const&)'
/opt/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64GccDPOpt/lib/libOpenFOAM.so: undefined reference to `Foam::UPstream::init(int&, char**&)'
/opt/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64GccDPOpt/lib/libmeshTools.so: undefined reference to `Foam::geometricSurfacePatch::geometricSurfacePatch()'
/opt/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64GccDPOpt/lib/libfiniteVolume.so: undefined reference to `Foam::UIPstream::UIPstream(int, Foam::PstreamBuffers&)'
/opt/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64GccDPOpt/lib/libfiniteVolume.so: undefined reference to `Foam::triSurface::~triSurface()'
/opt/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64GccDPOpt/lib/libmeshTools.so: undefined reference to `Foam::triSurface::operator=(Foam::triSurface const&)'
/opt/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64GccDPOpt/lib/libmeshTools.so: undefined reference to `Foam::triSurface::sortedEdgeFaces() const'
/opt/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64GccDPOpt/lib/libmeshTools.so: undefined reference to `Foam::triSurface::triSurface(Foam::List<Foam::labelledTri> const&, Foam::Field<Foam::Vector<double> > const&)'
/opt/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64GccDPOpt/lib/libmeshTools.so: undefined reference to `Foam::triSurface::triSurface(Foam::triSurface const&)'
/opt/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64GccDPOpt/lib/libmeshTools.so: undefined reference to `Foam::triSurface::triSurface(Foam::List<Foam::labelledTri>&, Foam::List<Foam::geometricSurfacePatch> const&, Foam::Field<Foam::Vector<double> >&, bool)'
/opt/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64GccDPOpt/lib/libOpenFOAM.so: undefined reference to `Foam::UPstream::addValidParOptions(Foam::HashTable<Foam::string, Foam::word, Foam::string::hash>&)'
/opt/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64GccDPOpt/lib/libOpenFOAM.so: undefined reference to `Foam::UPstream::exit(int)'
/opt/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64GccDPOpt/lib/libmeshTools.so: undefined reference to `Foam::faceTriangulation::faceTriangulation(Foam::Field<Foam::Vector<double> > const&, Foam::face const&, Foam::Vector<double> const&, bool)'
/opt/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64GccDPOpt/lib/libmeshTools.so: undefined reference to `Foam::triSurface::~triSurface()'
/opt/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64GccDPOpt/lib/libfiniteVolume.so: undefined reference to `Foam::triSurface::write(Foam::fileName const&, bool) const'
/opt/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64GccDPOpt/lib/libmeshTools.so: undefined reference to `typeinfo for Foam::triSurface'
/opt/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64GccDPOpt/lib/libmeshTools.so: undefined reference to `Foam::triSurface::movePoints(Foam::Field<Foam::Vector<double> > const&)'
/opt/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64GccDPOpt/lib/libmeshTools.so: undefined reference to `Foam::DimensionedField<int, Foam::triSurfaceGeoMesh>::typeName'
/opt/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64GccDPOpt/lib/libmeshTools.so: undefined reference to `Foam::triSurface::triSurface(Foam::triSurface const&)'
/opt/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64GccDPOpt/lib/libmeshTools.so: undefined reference to `Foam::triSurface::markZones(Foam::List<bool> const&, Foam::List<int>&) const'
/opt/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64GccDPOpt/lib/libmeshTools.so: undefined reference to `Foam::triSurface::writeStats(Foam::Ostream&) const'
/opt/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64GccDPOpt/lib/libmeshTools.so: undefined reference to `Foam::triSurface::clearOut()'
collect2: ld returned 1 exit status
make[2]: *** [/opt/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64GccDPOpt/bin/twoPhaseEulerFoam] Error 1
make[1]: *** [twoPhaseEulerFoam] Error 2
make[1]: Target `application' not remade because of errors.
make: *** [multiphase] Error 2
make: Target `application' not remade because of errors.
Thank you in advance.
anand_30 is offline   Reply With Quote

Old   December 25, 2011, 12:58
Default
  #2
Retired Super Moderator
 
Bruno Santos
Join Date: Mar 2009
Location: Lisbon, Portugal
Posts: 10,982
Blog Entries: 45
Rep Power: 128
wyldckat is a name known to allwyldckat is a name known to allwyldckat is a name known to allwyldckat is a name known to allwyldckat is a name known to allwyldckat is a name known to all
Greetings Anand,

OK, here are a few basic steps:
  1. Do NOT build OpenFOAM as root, unless you really know what you are doing!
  2. First build with your own user account. This minimizes chances of you accidentally nuking your system.
  3. Follow the official instructions from here: http://www.openfoam.org/download/git.php - and yes, they have instructions for Fedora
  4. Although, a few changes are recommended:
    • Define the number of processor cores to be used for compiling, directly on the source command line:
      Code:
      source $HOME/OpenFOAM/OpenFOAM-2.1.x/etc/bashrc WM_NCOMPPROCS=4
      4 is the number of cores. This will make the build process go a lot faster.
    • Run Allwmake like this:
      Code:
      ./Allwmake > make.log 2>&1
      This will generate a full log of the build process.
  5. When the build is finished, check the "make.log" file for errors. Usually the first errors are the ones that need tending to.
  6. If you can't figure out what's wrong, edit the file and replace any sensitive data, such as user names or something like that. Then package the file and attach on your next post.
    A way for packaging the file is to run this command:
    Code:
    tar -czf make.log.tar.gz make.log
Edit: I forgot to mention that after you've successfully compiled OpenFOAM, you can then move or copy it to "/opt" and change the permissions on the version at "/opt":
Code:
chown -R root:root /opt/OpenFOAM
Good luck!
Bruno
__________________

Last edited by wyldckat; December 25, 2011 at 13:01. Reason: see "Edit:"
wyldckat is offline   Reply With Quote

Old   December 25, 2011, 14:18
Default
  #3
New Member
 
Anand Takawale
Join Date: Mar 2011
Location: Pune,India
Posts: 12
Rep Power: 15
anand_30 is on a distinguished road
Send a message via Skype™ to anand_30
Thanks a lot Bruno
Never really realised that my system was at risk while building as root.
Thanks for reminding me.

Just started building process,i think its almost going to take an hour or so.
Hope it will be successful.

merry christmas
anand_30 is offline   Reply With Quote

Old   December 26, 2011, 03:09
Default
  #4
New Member
 
Anand Takawale
Join Date: Mar 2011
Location: Pune,India
Posts: 12
Rep Power: 15
anand_30 is on a distinguished road
Send a message via Skype™ to anand_30
Hey it worked this time....

I don't know why it gave me errors while building as root but everything worked out smooth when I build it as user.

Before building ParaView I just had to add
Code:
QMAKE_PATH="/usr/bin/qmake-qt4"
to makeParaView file in ThirdParty folder.

Also moved installation to /opt and changed its ownership and group to 'root'.

Changed bashrc file /opt/OpenFOAMOpenFOAM-2.1.x/etc/bashrc from
Code:
foamInstall=$HOME/$WM_PROJECT
to
Code:
foamInstall=/opt/$WM_PROJECT
So my .bashrc file in home folder now has
Code:
source /opt/OpenFOAM/OpenFOAM-2.1.x/etc/bashrc
Tried cavity tutorial just now,everything is working fine.
Thank you very much for the help Bruno.
anand_30 is offline   Reply With Quote

Reply

Tags
fedora 16, openfoam 2.1.x


Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are Off
Pingbacks are On
Refbacks are On


Similar Threads
Thread Thread Starter Forum Replies Last Post
OpenFoam 1.7.1 on Fedora 12 Help... Alphax OpenFOAM Installation 7 November 2, 2012 15:33
OpenFOAM 2.0.x on Fedora 16 64-bit JonW OpenFOAM 0 November 22, 2011 11:31
New OpenFOAM Forum Structure jola OpenFOAM 2 October 19, 2011 07:55
OpenFOAM 1.7.1 installation problem on Fedora 14 armonica OpenFOAM Installation 16 March 31, 2011 14:16
Cross-compiling OpenFOAM 1.7.0 on Linux for Windows 32 and 64bits with Mingw-w64 wyldckat OpenFOAM Announcements from Other Sources 3 September 8, 2010 07:25


All times are GMT -4. The time now is 08:37.