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Problem Installing OF 1.6 Ubuntu 9.10 (64 bit) - How to use GCC 4.4.1 |
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August 24, 2010, 12:53 |
Same wmake error in Arch Linux
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#21 |
Senior Member
Gijsbert Wierink
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Dear friends,
I am trying to get OpenFOAM-1.6.x to run on my laptop with Arch Linux (32 bit). OpenFOAM compiles, foamInstallationTest is happy, and tutorials run. But when I try to recompile a solver (e.g. icoFoam as myIcoFoam) I get an error: Code:
linuxGccDPOpt/options:6: *** missing separator. Stop. wmake error: file 'Make/linuxGccDPOpt/objectFiles' could not be created Code:
wcleanLnIncludeAll rmdepall wcleanAll rm -rf `find $WM_THIRD_PARTY_DIR/* -name linuxGccDPOpt* | grep -v openmpi`
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Regards, Gijs |
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August 24, 2010, 17:40 |
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#22 |
Retired Super Moderator
Bruno Santos
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Greetings Gijsbert,
That's odd... what changes did you make to these files: Code:
Make/files Make/options It's possible that you removed or added a line in the "options" file and didn't add a "\" to the end of it. The character "\", when is the last character in a line, indicates that the "current line is to be continued on the next one". So, it's possible that when you added a line, you either forgot to add "\" at the end; or maybe you did add, but left a space right after it, which will render the "\" useless... Best regards, Bruno
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August 25, 2010, 04:10 |
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#23 |
Senior Member
Gijsbert Wierink
Join Date: Mar 2009
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Hi Bruno,
Thanks for your reply. I also read about this "last character should be an '\'" issue and that should be ok. The problem even occured for copied original solvers. What I did overlook was that, when compilerInstall is set to System, OF looks for gcc in /bin/, not in /usr/bin/. In /bin/ (at least in my machine) there was no gcc, so I made a link Code:
ln -s /usr/bin/gcc /bin/gcc So, now solver recompile and some of my own libs compile, but not all. One was complaining about a UList declaration, which should be ok. It compiles on other systems. Perhaps src did not compile correctly because of the gcc issue. At the moment I am recompiling OF with the soft link to gcc in place, let's see if that fixes it.
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Regards, Gijs |
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August 25, 2010, 06:26 |
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#24 |
Senior Member
Gijsbert Wierink
Join Date: Mar 2009
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Right, that (the gcc soft link) fixed it. The compile error of our own class seemed to have been caused by an iterator definition. I changed it and now it works. Strange that it compiled just like that on my Scientific Linux desktop ... Anyways, it works . Thanks for your reply, Bruno!
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Regards, Gijs |
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May 11, 2011, 08:18 |
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#25 |
New Member
lazio
Join Date: Apr 2010
Posts: 22
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Hi,
I would just like to add that Bruno's solution i.e. Adding -P option to first line of $(WM_DIR)/rules/linux64Gcc/general Also worked for OpenFoam-1.5-dev on Ubuntu 11.04 Thanks |
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August 23, 2011, 13:31 |
Problem installing 1.6.x in Fedora 14
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#26 |
Member
Naveen
Join Date: Feb 2010
Location: Los Angeles
Posts: 65
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Hello,
I am trying to install 1.6.x in my fedora 14, the gcc compiler I have is 4.5.1. In the post #7 Bruno mentioned that 1.6.x builds fine for 4.4.? and above. So, I followed exactly what was suggested in posts #7 and #11, leaving the 32 bit part. But it did not compile properly. Please see the attached log files for Allwmake and foamInstallationTest. Could somebody please respond. Thinking that 1.6.x will install without giving much trouble, I completely removed 1.7.1 which I have been using for some time. I needed 1.6.x to develop some applications related to conjugateHearFoam (which is not available in 1.7.1) and I don't know how to maintain two versions in the same machine, so I had to remove 1.7.1. I spent all day yesterday to install 1.6.x and failed in all my attempts. Any help will be highly appreciated as I need this very badly for a conference which I am attending in ten days. Thank you Last edited by vetnav; August 23, 2011 at 16:00. |
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August 23, 2011, 17:47 |
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#27 |
Retired Super Moderator
Bruno Santos
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Greetings Naveen,
I had to track you down from http://www.cfd-online.com/Forums/ope...tml#post321238 to reply to you As it turns out, I wasn't able to predict the future, as I later came to know: OpenFOAM 1.6.x, 1.7.0 and 1.7.x are not fully prepared to work with gcc-4.5.x - A few days after the first post on that thread, OpenFOAM 1.7.1 and 1.7.x were ready willing and able to build and work with gcc 4.5.0 and above (at least to 4.6.x, AFAIK so far ) If conjugateHeatFoam is in 1.6.x and not 1.7.1, then it was most likely merged into some other solver... let me see if I can find it for you... Whoooaa, stop it right there!! OpenFOAM 1.6.x is one thing, OpenFOAM 1.6-ext is a whole other!!! And it's 1.6-ext that has conjugateHeatFoam! You can get 1.6-ext from here: http://openfoam-extend.git.sourcefor...-ext;a=summary - or better yet, follow the instructions from here: http://www.cfd-online.com/Forums/ope...tml#post299707 - post #25 It should build with gcc 4.5.1 without any problems... or at least I hope so. As for having both versions available on your system, remove/comment any lines related to OpenFOAM that you have in the file "$HOME/.bashrc" and add these instead: Code:
alias of171='. $HOME/OpenFOAM/OpenFOAM-1.7.1/etc/bashrc' alias of16ext='. $HOME/OpenFOAM/OpenFOAM-1.6-ext/etc/bashrc' Good luck! Bruno
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Last edited by wyldckat; August 23, 2011 at 17:48. Reason: fixed typo... |
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August 23, 2011, 18:20 |
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#28 |
Senior Member
Joern Beilke
Join Date: Mar 2009
Location: Dresden
Posts: 533
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"heatTransfer/chtMultiRegionFoam" in v2.0.x should also do the job.
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August 23, 2011, 21:37 |
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#29 |
Member
Naveen
Join Date: Feb 2010
Location: Los Angeles
Posts: 65
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@ Bruno
Thank you very much for all the explanation. What an idiot I am to not differentiate between 1.6.x and 1.6-ext. But nothing is straight I tried to install OpenFOAM-1.6-ext. I downloaded the directory using the command given here http://www.extend-project.de/home/33...16-ext/article Untarred the folder and ran the system check. After sourcing the bashrc I went into Thirdparty folder and executed AllMake. Then in the top level directory $WM_PROJECT_DIR I ran Allwmake. After building or compiling for more than two hours it gave me errors . More than 24 hours of my patience yielded then and I stopped the compilation process. Please look at the log file and please tell me how can I resolve this issue and install 1.6-ext. Now its almost two days I was just trying to install OpenFOAM. @ Joern Thank you very much for the info. I was not aware of it. I will definitely try installing 2.0.x. |
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August 24, 2011, 17:24 |
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#30 |
Retired Super Moderator
Bruno Santos
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Hi Naveen,
Sadly I've never built OpenFOAM 1.6-ext. Ever since I saw how they build the ThirdParty folder, I've steered clear from trying to building it Using RPM with OpenFOAM is simply unnatural But I have installed it by using the ready to use Debian packages for Ubuntu, as explained here: OpenFOAM-dev-1.5 or OpenFOAM-1.6-ext under Ubuntu Lucid 10.04 LTS Anyway, I did tell you to read post #25 in this thread: Extend Project Release 1.6-ext - there you should find a very good instruction list on how to build 1.6-ext. Another (veeery long) thread about this subject is this one: http://www.cfd-online.com/Forums/ope...m-1-6-ext.html - again, since I'm not familiar with it, I don't know any pointers for it Good luck! Bruno
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September 20, 2011, 21:27 |
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#31 |
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Santiago
Join Date: Dec 2009
Posts: 85
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hi Wyldckat, ]
I have the previously mentioned problem: gascortado@me257b:~/OpenFOAM/gascortado-1.6-ext/applications/solvers/my_pisoFSI$ wmake all linux64GccDPOpt/options:6: *** missing separator. Stop. I installed OF-1.6-ext as you suggested using the Synaptic package manager and everything works fine. I also verified that the "general" file that is in the rules folder has the edited line and it does. However, when I want to compile anything i get this error. Any idea of what to do?? Thanks man |
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September 21, 2011, 15:43 |
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#32 |
Retired Super Moderator
Bruno Santos
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Hi Santiago,
Mmm... Without more information, I'm going to have to assume that it's happening the same I saw the other day:
Bruno
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September 22, 2011, 19:14 |
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#33 |
Member
Santiago
Join Date: Dec 2009
Posts: 85
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Hi Wyldckat for your help again...
I checked the file OpenFOAM-1.6.x/wmake/rules/linuxGcc/general and it looks like this: CPP = cpp $(GFLAGS) -P LD = ld -melf_i386 PROJECT_LIBS = -l$(WM_PROJECT) -ldl include $(GENERAL_RULES)/standard include $(RULES)/X include $(RULES)/c include $(RULES)/c++ so that "traditional" stuff is missing. I'm using OF-1.6-ext downloaded using Synaptic manager. I cannot modify the file since it says that I'm not the owner. I have: gascortado@me257b:~$ lsb_release -a No LSB modules are available. Distributor ID: Ubuntu Description: Ubuntu 11.04 Release: 11.04 Codename: natty gcc --version gcc (Ubuntu/Linaro 4.5.2-8ubuntu4) 4.5.2 cpp --version cpp (Ubuntu/Linaro 4.5.2-8ubuntu4) 4.5.2
inux64GccDPOpt/options:6: *** missing separator. Stop. wmake error: file 'Make/linux64GccDPOpt/objectFiles' could not be created that is all it says Any ideas? Thanks again Also, as a possible related problem, I am able to compile my solver without problems in my other computer (ubuntu 10.10). I tried coping the executable file to this computer and this is what it says: gascortado@me257b:~/OpenFOAM/gascortado-1.6-ext/run/testCase5$ ./Allrunbash: ./Allrun: Permission denied ./Allrun just calls my solver I also tried to compile my groovyBC folder and I get the a similar message: gascortado@me257b:~/groovyBC$ wmake all linux64GccDPOpt/options:13: *** missing separator. Stop. wmake error: file 'Make/linux64GccDPOpt/objectFiles' could not be created |
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September 23, 2011, 15:22 |
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#34 | ||||||
Retired Super Moderator
Bruno Santos
Join Date: Mar 2009
Location: Lisbon, Portugal
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Hi Santiago,
Quote:
Code:
sudo gedit wmake/rules/linuxGcc/general More about sudo: http://en.wikipedia.org/wiki/Sudo Quote:
Quote:
Quote:
Quote:
Code:
chown +x Allrun Quote:
Best regards, Bruno
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Last edited by wyldckat; September 23, 2011 at 15:23. Reason: Ooops.... it's "-traditional-cpp", not just "-traditional" |
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September 23, 2011, 19:41 |
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#35 | |
Member
Santiago
Join Date: Dec 2009
Posts: 85
Rep Power: 16 |
Quote:
gascortado@me257b:~$ sudo gedit wmake/rules/linuxGcc/general (gedit:25084): Gtk-WARNING **: Attempting to store changes into `/root/.local/share/recently-used.xbel', but failed: Failed to create file '/root/.local/share/recently-used.xbel.7G1W1V': No such file or directory (gedit:25084): Gtk-WARNING **: Attempting to set the permissions of `/root/.local/share/recently-used.xbel', but failed: No such file or directory gedit opens a file "general" at /home/gascortado/wmake/rules/linuxGcc but is blank. The actual general file is located at usr/lib/OpenFOAM-1.6-ext/wmake/rules/linuxGcc Another thing, I tried gascortado@me257b:~$ chown +x Allrun and I got: chown: invalid user: `+x' Any ideas man? Thanks yet again |
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September 23, 2011, 21:58 |
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#36 |
Senior Member
Hua Zen
Join Date: Mar 2009
Posts: 138
Rep Power: 17 |
chown --> chmod
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September 24, 2011, 04:21 |
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#37 |
Retired Super Moderator
Bruno Santos
Join Date: Mar 2009
Location: Lisbon, Portugal
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Hi Santiago and Hua Zen,
Hua Zen is right, it's: Code:
chmod +x Allrun And I only wrote the partial path because I thought you knew where I was pointing at... so the correct full path should be: Code:
gksu gedit /usr/lib/OpenFOAM-1.6-ext/wmake/rules/linuxGcc/general Code:
gksu gedit /usr/lib/OpenFOAM-1.6-ext/wmake/rules/linux64Gcc/general Best regards, Bruno
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Last edited by wyldckat; September 24, 2011 at 04:23. Reason: see "edit:" |
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September 27, 2011, 21:08 |
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#38 |
Member
Santiago
Join Date: Dec 2009
Posts: 85
Rep Power: 16 |
Hi Wyldckat,
I did what you recommended and my files look like this now: gksu gedit /usr/lib/OpenFOAM-1.6-ext/wmake/rules/linux64Gcc/general CPP = cpp -traditional-cpp $(GFLAGS) LD = ld PROJECT_LIBS = -l$(WM_PROJECT) -liberty -ldl include $(GENERAL_RULES)/standard include $(RULES)/X include $(RULES)/c include $(RULES)/c++ gksu gedit /usr/lib/OpenFOAM-1.6-ext/wmake/rules/linuxGcc/general CPP = cpp -traditional-cpp $(GFLAGS) -P LD = ld -melf_i386 PROJECT_LIBS = -l$(WM_PROJECT) -ldl include $(GENERAL_RULES)/standard include $(RULES)/X include $(RULES)/c include $(RULES)/c++ However when I try to run wmake as before I get the same error: gascortado@me257b:~/OpenFOAM/gascortado-1.6-ext/applications/solvers/my_pisoFSI$ wmake all linux64GccDPOpt/options:6: *** missing separator. Stop. wmake error: file 'Make/linux64GccDPOpt/objectFiles' could not be created When I close gedit after running gksu gedit /usr/lib/OpenFOAM-1.6-ext/wmake/rules/linuxGcc/general or gksu gedit /usr/lib/OpenFOAM-1.6-ext/wmake/rules/linux64Gcc/general I get the following messages that I don't know what they mean, take a look: ((gedit:31604): Gtk-WARNING **: Attempting to store changes into `/root/.local/share/recently-used.xbel', but failed: Failed to create file '/root/.local/share/recently-used.xbel.AFOH2V': No such file or directory (gedit:31604): Gtk-WARNING **: Attempting to set the permissions of `/root/.local/share/recently-used.xbel', but failed: No such file or directory (gedit:31604): Gtk-WARNING **: Attempting to store changes into `/root/.local/share/recently-used.xbel', but failed: Failed to create file '/root/.local/share/recently-used.xbel.SREG2V': No such file or directory (gedit:31604): Gtk-WARNING **: Attempting to set the permissions of `/root/.local/share/recently-used.xbel', but failed: No such file or directory Any ideas??? THanks again |
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September 28, 2011, 09:00 |
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#39 |
Member
Santiago
Join Date: Dec 2009
Posts: 85
Rep Power: 16 |
Hi Wyldckat,
I figured out the problem. I erased the folder linuxGccDOpt and re-run wmake all and that did the trick. Now I have other problems: When I hit gascortado@me257b:~/OpenFOAM/gascortado-1.6-ext/applications/solvers/my_pisoFSI$ wmake all g++ -m64 -Dlinux64 -DWM_DP -Wall -Wno-strict-aliasing -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3 -DNoRepository -ftemplate-depth-40 -I/usr/lib/OpenFOAM-1.6-ext/src/dynamicMesh/dynamicFvMesh/lnInclude -I/usr/lib/OpenFOAM-1.6-ext/src/dynamicMesh/dynamicMesh/lnInclude -I/usr/lib/OpenFOAM-1.6-ext/src/meshTools/lnInclude -I/usr/lib/OpenFOAM-1.6-ext/src/turbulenceModels/incompressible/turbulenceModel -I/usr/lib/OpenFOAM-1.6-ext/src/transportModels -I/usr/lib/OpenFOAM-1.6-ext/src/transportModels/incompressible/singlePhaseTransportModel -I/usr/lib/OpenFOAM-1.6-ext/src/finiteVolume/lnInclude -DFACE_DECOMP -I/usr/lib/OpenFOAM-1.6-ext/src/tetDecompositionFiniteElement/fields/tetPointFields -I/usr/lib/OpenFOAM-1.6-ext/src/tetDecompositionFiniteElement/tetFemMatrix -I/usr/lib/OpenFOAM-1.6-ext/src/tetDecompositionFiniteElement/tetPointMesh -I/usr/lib/OpenFOAM-1.6-ext/src/tetDecompositionFiniteElement/tetPolyMesh -I/usr/lib/OpenFOAM-1.6-ext/src/tetDecompositionFiniteElement/tetPolyMeshFaceDecomp -I/usr/lib/OpenFOAM-1.6-ext/src/tetDecompositionFiniteElement/tetFemSolution -I/usr/lib/OpenFOAM-1.6-ext/src/tetDecompositionFiniteElement/tetPolyMeshFaceDecomp/tetPolyBoundaryMesh -I/usr/lib/OpenFOAM-1.6-ext/src/tetDecompositionFiniteElement/tetPolyMeshFaceDecomp/tetPolyPatches/tetPolyPatch -I/usr/lib/OpenFOAM-1.6-ext/src/tetDecompositionFiniteElement/tetPolyMeshCellDecomp -I/usr/lib/OpenFOAM-1.6-ext/src/tetDecompositionFiniteElement/tetPolyMeshCellDecomp/tetPolyBoundaryMesh -I/usr/lib/OpenFOAM-1.6-ext/src/tetDecompositionFiniteElement/tetPolyMeshCellDecomp/tetPolyPatches/tetPolyPatch -I/usr/lib/OpenFOAM-1.6-ext/src/tetDecompositionFiniteElement/fields/tetPolyPatchFields/tetPolyPatchField -I/usr/lib/OpenFOAM-1.6-ext/src/tetDecompositionFiniteElement/fields/elementFields -I/usr/lib/OpenFOAM-1.6-ext/src/tetDecompositionFiniteElement/elementMesh -I/usr/lib/OpenFOAM-1.6-ext/src/tetDecompositionFiniteElement/fields/elementPatchFields/elementPatchField -I/usr/lib/OpenFOAM-1.6-ext/src/tetDecompositionFiniteElement/tetPolyMeshFaceDecomp/tetPolyPatches/faceTetPolyPatch -I/usr/lib/OpenFOAM-1.6-ext/src/tetDecompositionFiniteElement/tetPolyMeshCellDecomp/tetPolyPatches/faceTetPolyPatch -I/usr/lib/OpenFOAM-1.6-ext/src/tetDecompositionFiniteElement/tetPolyPatchInterpolation -I/usr/lib/OpenFOAM-1.6-ext/src/tetDecompositionFiniteElement/tetPolyPatchInterpolation/tetPolyPatchInterpolationFaceDecomp -I/usr/lib/OpenFOAM-1.6-ext/src/tetDecompositionFiniteElement/tetPolyPatchInterpolation/tetPolyPatchInterpolationCellDecomp -I/usr/lib/OpenFOAM-1.6-ext/src/tetDecompositionFiniteElement/fields/tetPolyPatchFields/basic/fixedValue -I/usr/lib/OpenFOAM-1.6-ext/src/dynamicMesh/meshMotion/tetDecompositionMotionSolver/lnInclude -IlnInclude -I. -I/usr/lib/OpenFOAM-1.6-ext/src/OpenFOAM/lnInclude -I/usr/lib/OpenFOAM-1.6-ext/src/OSspecific/POSIX/lnInclude -fPIC Make/linux64GccDPOpt/tractionDisplacementFvPatchVectorField.o Make/linux64GccDPOpt/my_pisoFsi.o -L/usr/lib/OpenFOAM-1.6-ext/lib \ -ldynamicFvMesh -ltopoChangerFvMesh -ldynamicMesh -lmeshTools -lincompressibleTransportModels -lincompressibleTurbulenceModel -lincompressibleRASModels -lincompressibleLESModels -lfiniteVolume -llduSolvers -lfaceDecompFiniteElement -lfaceDecompositionMotionSolver -lOpenFOAM -liberty -ldl -lm -o /home/gascortado/OpenFOAM/gascortado-1.6-ext/applications/bin/my_pisoFsi /usr/bin/ld: cannot find -liberty collect2: ld returned 1 exit status make: *** [/home/gascortado/OpenFOAM/gascortado-1.6-ext/applications/bin/my_pisoFsi] Error 1 And I'm also trying to compile an older version of groovyBC that I modified and successfully compile on my other computer (Ubuntu 10.10) but not here. THis is what I get: gastascortado@me257b:~/groovyBC$ wmake libso SOURCE=PatchValueExpressionDriver.C ; g++ -m64 -Dlinux64 -DWM_DP -Wall -Wno-strict-aliasing -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3 -DNoRepository -ftemplate-depth-40 -IMake/linux64GccDPOpt -DFOAM_DEV -I/usr/lib/OpenFOAM-1.6-ext/src/finiteVolume/lnInclude -IlnInclude -I. -I/usr/lib/OpenFOAM-1.6-ext/src/OpenFOAM/lnInclude -I/usr/lib/OpenFOAM-1.6-ext/src/OSspecific/POSIX/lnInclude -fPIC -c $SOURCE -o Make/linux64GccDPOpt/PatchValueExpressionDriver.o SOURCE=groovyBCPointPatchFields.C ; g++ -m64 -Dlinux64 -DWM_DP -Wall -Wno-strict-aliasing -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3 -DNoRepository -ftemplate-depth-40 -IMake/linux64GccDPOpt -DFOAM_DEV -I/usr/lib/OpenFOAM-1.6-ext/src/finiteVolume/lnInclude -IlnInclude -I. -I/usr/lib/OpenFOAM-1.6-ext/src/OpenFOAM/lnInclude -I/usr/lib/OpenFOAM-1.6-ext/src/OSspecific/POSIX/lnInclude -fPIC -c $SOURCE -o Make/linux64GccDPOpt/groovyBCPointPatchFields.o In file included from Make/linux64GccDPOpt/location.hh:44:0, from PatchValueExpressionParser.tab.hh:65, from PatchValueExpressionDriver.H:59, from PatchValueExpressionDriver.C:34: position.hh: In function âbool pve:perator==(const pve:osition&, const pve:osition&)â: position.hh:136:69: warning: suggest parentheses around â&&â within â||â In file included from Make/linux64GccDPOpt/location.hh:44:0, from PatchValueExpressionParser.tab.hh:65, from PatchValueExpressionDriver.H:59, from groovyBCPointPatchField.H:59, from groovyBCPointPatchFields.H:37, from groovyBCPointPatchFields.C:34: position.hh: In function âbool pve:perator==(const pve:osition&, const pve:osition&)â: position.hh:136:69: warning: suggest parentheses around â&&â within â||â PatchValueExpressionDriver.C: In member function âvoid Foam::PatchValueExpressionDriver::writeLines(Foam: :Ostream&) constâ: PatchValueExpressionDriver.C:384:5: error: âFoam::HashTable<Foam::interpolationTable<double>, Foam::word>::const_iterator::const_iteratorâ names the constructor, not the type PatchValueExpressionDriver.C:384:5: error: expected â;â before âitâ PatchValueExpressionDriver.C:384:5: error: statement cannot resolve address of overloaded function PatchValueExpressionDriver.C:384:5: error: âitâ was not declared in this scope make: *** [Make/linux64GccDPOpt/PatchValueExpressionDriver.o] Error 1 make: *** Waiting for unfinished jobs.... gascortado@me257b:~/groovyBC$ Any ideas? Thanks a lot |
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October 1, 2011, 12:50 |
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#40 | ||
Retired Super Moderator
Bruno Santos
Join Date: Mar 2009
Location: Lisbon, Portugal
Posts: 10,982
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Hi Santiago,
Quote:
Quote:
Code:
sudo apt-get install binutils-dev Code:
wclean all wmake all Bruno
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