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[OpenFOAM.com] OF2212 compilation error on cluster |
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Thibault XAVIER
Join Date: Sep 2021
Posts: 2
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Hello to all,
I'm trying to compile OpenFoam 2212 from source on a remote machine and I have a compilation error that I don't understand. I couldn't find an answer by copying the error message on the web. Do you have any idea where it came from and how to fix it? Thanks for your help ![]() Edit : same procedure applied to OpenFOAM2106 does not generate any error. Here is an extract from the log file "log.linux64IccDPInt32Opt" Compiling enabled on 8 cores gcc=/usr/bin/gcc clang= mpirun=/ccc/products/openmpi-4.1.4/intel--20.0.0/default/bin/mpirun make=/usr/bin/make cmake=/usr/bin/cmake wmake=/ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/wmake/wmake m4=/usr/bin/m4 flex=/usr/bin/flex compiler=/ccc/products/icc-20.0.0/system/default/20.0.0/bin/intel64/icpc icpc (ICC) 19.1.0.166 20191121 ======================================== 2023-01-10 09:51:16 +0100 Starting compile OpenFOAM-v2212 Allwmake Icc system compiler [] linux64IccDPInt32Opt, with SYSTEMOPENMPI sys-openmpi ======================================== built wmake-bin (linux64Icc) Skip ThirdParty (no directory) ======================================== Compile OpenFOAM libraries ======================================== ln: OpenFOAM/lnInclude ln: OSspecific/POSIX/lnInclude found <sys/inotify.h> -- enabling inotify for file monitoring. wmake libo (POSIX) icpc -std=c++14 -pthread -fp-trap=common -fp-model precise -DOPENFOAM=2212 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof -Wno-unknown-pragmas -diag-disable 327,654,1125,1292,2289,2304,11062,11074,11076 -O3 -DNoRepository -DFOAM_USE_INOTIFY -iquote. -IlnInclude -I/ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/src/OpenFOAM/lnInclude -I/ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/src/OSspecific/POSIX/lnInclude -fPIC -c signals/sigSegv.C -o /ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/build/linux64IccDPInt32Opt/src/OSspecific/POSIX/signals/sigSegv.o icpc -std=c++14 -pthread -fp-trap=common -fp-model precise -DOPENFOAM=2212 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof -Wno-unknown-pragmas -diag-disable 327,654,1125,1292,2289,2304,11062,11074,11076 -O3 -DNoRepository -DFOAM_USE_INOTIFY -iquote. -IlnInclude -I/ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/src/OpenFOAM/lnInclude -I/ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/src/OSspecific/POSIX/lnInclude -fPIC -c signals/sigInt.C -o /ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/build/linux64IccDPInt32Opt/src/OSspecific/POSIX/signals/sigInt.o [........................] icpc -std=c++14 -pthread -fp-trap=common -fp-model precise -DOPENFOAM=2212 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof -Wno-unknown-pragmas -diag-disable 327,654,1125,1292,2289,2304,11062,11074,11076 -O3 -DNoRepository -I/ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/build/linux64IccDPInt32Opt/src/OpenFOAM -DHAVE_LIBZ -iquote. -IlnInclude -I/ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/src/OpenFOAM/lnInclude -I/ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/src/OSspecific/POSIX/lnInclude -fPIC -c db/dictionary/dictionary.C -o /ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/build/linux64IccDPInt32Opt/src/OpenFOAM/db/dictionary/dictionary.o icpc -std=c++14 -pthread -fp-trap=common -fp-model precise -DOPENFOAM=2212 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof -Wno-unknown-pragmas -diag-disable 327,654,1125,1292,2289,2304,11062,11074,11076 -O3 -DNoRepository -I/ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/build/linux64IccDPInt32Opt/src/OpenFOAM -DHAVE_LIBZ -iquote. -IlnInclude -I/ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/src/OpenFOAM/lnInclude -I/ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/src/OSspecific/POSIX/lnInclude -fPIC -c db/dictionary/dictionaryIO.C -o /ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/build/linux64IccDPInt32Opt/src/OpenFOAM/db/dictionary/dictionaryIO.o Internal error loop: assertion failed: find_seq_in_lookup_table: seq_number not found (shared/cfe/edgcpfe/il.c, line 4284) compilation aborted for db/IOstreams/Pstreams/IPBstreams.C (code 4) icpc -std=c++14 -pthread -fp-trap=common -fp-model precise -DOPENFOAM=2212 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof -Wno-unknown-pragmas -diag-disable 327,654,1125,1292,2289,2304,11062,11074,11076 -O3 -DNoRepository -I/ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/build/linux64IccDPInt32Opt/src/OpenFOAM -DHAVE_LIBZ -iquote. -IlnInclude -I/ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/src/OpenFOAM/lnInclude -I/ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/src/OSspecific/POSIX/lnInclude -fPIC -c db/dictionary/dictionarySearch.C -o /ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/build/linux64IccDPInt32Opt/src/OpenFOAM/db/dictionary/dictionarySearch.o make: *** [/ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/build/linux64IccDPInt32Opt/src/OpenFOAM/db/IOstreams/Pstreams/IPBstreams.o] Error 4 make: *** Waiting for unfinished jobs.... Last edited by ThibaultGET; January 10, 2023 at 07:09. |
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compilation, icpc, openfoam |
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