[torstefj]

Dear all,

I am trying to install OpenFOAM version 5 in my project folder on a high performance computing cluster.

I do the following:
1) I load modules of packages required by OpenFOAM. The output of the command "module list" is the following:

Currently Loaded Modules:
1) StdEnv (S) 4) GCC/6.3.0-2.27 7) ncurses/6.0-GCCcore-6.3.0 10) hwloc/1.11.5-GCC-6.3.0-2.27
2) GCCcore/6.3.0 5) M4/1.4.18-GCCcore-6.3.0 8) CMake/3.9.1-GCCcore-6.3.0 11) OpenMPI/2.0.2-GCC-6.3.0-2.27
3) binutils/2.27-GCCcore-6.3.0 6) flex/2.6.4-GCCcore-6.3.0 9) numactl/2.0.11-GCC-6.3.0-2.27

Where:
S: Module is Sticky, requires --force to unload or purge

2) I add the following line to my ~/.bashrc file
source <installation_dir>/OpenFOAM-5.0/etc/bashrc
and I then type source ~/.bashrc in the terminal window

3) I then execute ./Allwmake

The last few lines of the output seem to indicate that I have made some mistake specifying the OpenMPI version. In the output it shows that OpenMPI/4.1.4-intel-compilers-2022.1.0 is involved, but my intension is to use version OpenMPI/2.0.2-GCC-6.3.0-2.27 as shown by the output of module list above.

Would anyone be able to give me some hints on how I can find out what is wrong?

Thanks in advance for your help.

Regards,
Torstein

The last few lines of the output of ./Allwmake are shown here:

/cluster/projects/nn4683k/eb_v4.5.0_v2_modules/software/binutils/2.27-GCCcore-6.3.0/bin/ld.bfd: warning: libiomp5.so, needed by //cluster/software/OpenMPI/4.1.4-intel-compilers-2022.1.0/lib/libmpi.so.40, not found (try using -rpath or -rpath-link)
/cluster/projects/nn4683k/eb_v4.5.0_v2_modules/software/binutils/2.27-GCCcore-6.3.0/bin/ld.bfd: warning: libimf.so, needed by //cluster/software/OpenMPI/4.1.4-intel-compilers-2022.1.0/lib/libmpi.so.40, not found (try using -rpath or -rpath-link)
/cluster/projects/nn4683k/eb_v4.5.0_v2_modules/software/binutils/2.27-GCCcore-6.3.0/bin/ld.bfd: warning: libsvml.so, needed by //cluster/software/OpenMPI/4.1.4-intel-compilers-2022.1.0/lib/libmpi.so.40, not found (try using -rpath or -rpath-link)
/cluster/projects/nn4683k/eb_v4.5.0_v2_modules/software/binutils/2.27-GCCcore-6.3.0/bin/ld.bfd: warning: libirng.so, needed by //cluster/software/OpenMPI/4.1.4-intel-compilers-2022.1.0/lib/libmpi.so.40, not found (try using -rpath or -rpath-link)
/cluster/projects/nn4683k/eb_v4.5.0_v2_modules/software/binutils/2.27-GCCcore-6.3.0/bin/ld.bfd: warning: libintlc.so.5, needed by //cluster/software/OpenMPI/4.1.4-intel-compilers-2022.1.0/lib/libmpi.so.40, not found (try using -rpath or -rpath-link)
//cluster/software/OpenMPI/4.1.4-intel-compilers-2022.1.0/lib/libmpi.so.40: undefined reference to `__intel_cpu_features_init_x'
//cluster/software/OpenMPI/4.1.4-intel-compilers-2022.1.0/lib/libmpi.so.40: undefined reference to `__intel_sse2_strncat'
//cluster/software/OpenMPI/4.1.4-intel-compilers-2022.1.0/lib/libopen-rte.so.40: undefined reference to `__intel_sse2_strcat'
//cluster/software/OpenMPI/4.1.4-intel-compilers-2022.1.0/lib/libmpi.so.40: undefined reference to `__intel_sse2_strrchr'
//cluster/software/OpenMPI/4.1.4-intel-compilers-2022.1.0/lib/libmpi.so.40: undefined reference to `_intel_fast_memset'
//cluster/software/OpenMPI/4.1.4-intel-compilers-2022.1.0/lib/libmpi.so.40: undefined reference to `__intel_sse2_strcpy'
//cluster/software/OpenMPI/4.1.4-intel-compilers-2022.1.0/lib/libmpi.so.40: undefined reference to `__intel_cpu_feature_indicator_x'
//cluster/software/OpenMPI/4.1.4-intel-compilers-2022.1.0/lib/libmpi.so.40: undefined reference to `_intel_fast_memmove'
//cluster/software/OpenMPI/4.1.4-intel-compilers-2022.1.0/lib/libopen-pal.so.40: undefined reference to `__intel_sse2_strspn'
//cluster/software/OpenMPI/4.1.4-intel-compilers-2022.1.0/lib/libmpi.so.40: undefined reference to `_intel_fast_memcpy'
//cluster/software/OpenMPI/4.1.4-intel-compilers-2022.1.0/lib/libmpi.so.40: undefined reference to `__intel_sse2_strdup'
//cluster/software/OpenMPI/4.1.4-intel-compilers-2022.1.0/lib/libmpi.so.40: undefined reference to `__intel_sse2_strlen'
//cluster/software/OpenMPI/4.1.4-intel-compilers-2022.1.0/lib/libmpi.so.40: undefined reference to `__intel_sse2_strncmp'
//cluster/software/OpenMPI/4.1.4-intel-compilers-2022.1.0/lib/libopen-rte.so.40: undefined reference to `_intel_fast_memcmp'
//cluster/software/OpenMPI/4.1.4-intel-compilers-2022.1.0/lib/libmpi.so.40: undefined reference to `__intel_sse2_strchr'
collect2: error: ld returned 1 exit status
make[2]: *** [/cluster/projects/nn4683k/OpenFOAM_source/OpenFOAM-5.0/platforms/linux64GccDPInt32Opt/bin/laplacianFoam] Error 1
make[2]: Leaving directory `/cluster/projects/nn4683k/OpenFOAM_source/OpenFOAM-5.0/applications/solvers/basic/laplacianFoam'
make[1]: *** [laplacianFoam] Error 2
make[1]: Leaving directory `/cluster/projects/nn4683k/OpenFOAM_source/OpenFOAM-5.0/applications/solvers/basic'
make: *** [basic] Error 2