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[foam-extend.org] Foam-Extend 4.0 Compiling on F33

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Old   April 17, 2021, 22:22
Unhappy Foam-Extend 4.0 Compiling on F33
  #1
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Sultan Islam
Join Date: Dec 2015
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Dear everyone,

I am trying to compile foam extend 4.0 on F33 but its faiiling. I keep getting fatal error cannot find ld for almost every file it tries to compile. I tried using Fedora's own GCC 10 and I even installed GCC 4.9, 5.5, 6.5, 75, 8.4, 9.3 and it still gives the error. I have ld on my system to and have all the pre-requisites too.

Here is my pref.sh
Code:
unset WM_THIRD_PARTY_USE_CMAKE_322
export WM_MPLIB=SYSTEMOPENMPI
export WM_CC=gcc55
export WM_CXX=g++55
My gcc and g++ executables are called gcc55 and g++55 (replace 55 with other versions like 49, 65, etc).

And here is a tidbit from my build log

Code:
make: Nothing to be done for 'all'.
+ wmakePrintBuild -check
same version as previous build
+ wmakeLnInclude foam
+ wmakeLnInclude meshTools
+ wmakeLnInclude OSspecific/POSIX
+ wmake libo OSspecific/POSIX
'/home/SI/.root/opt/OpenFOAM/foam/foam-extend-4.0/lib/linux64GccDPOpt/libOSspecific.o' is up to date.
+ set +x

Note: ignore spurious warnings about missing mpicxx.h headers
+ wmake libso foam
SOURCE=global/global.Cver ; sed -e 's/VERSION_STRING/4.0/' -e 's/BUILD_STRING/4.0-268bb07d15d8/' $SOURCE > Make/linux64GccDPOpt/global.C; g++55 -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-200 -DOMPI_SKIP_MPICXX -I/usr/include/openmpi-x86_64 -pthread    -I/home/SI/.root/opt/OpenFOAM/foam/foam-extend-4.0/ThirdParty/zlib-1.2.3 -IlnInclude -I. -I/home/SI/.root/opt/OpenFOAM/foam/foam-extend-4.0/src/foam/lnInclude -I/home/SI/.root/opt/OpenFOAM/foam/foam-extend-4.0/src/OSspecific/POSIX/lnInclude   -fPIC -c Make/linux64GccDPOpt/global.C -o Make/linux64GccDPOpt/global.o
collect2: fatal error: cannot find 'ld'
compilation terminated.
make: *** [/home/SI/.root/opt/OpenFOAM/foam/foam-extend-4.0/wmake/Makefile:188: /home/SI/.root/opt/OpenFOAM/foam/foam-extend-4.0/lib/linux64GccDPOpt/libfoam.so] Error 1
+ decompositionMethods/AllwmakeLnInclude
+ wmakeLnInclude decompositionMethods
+ wmakeLnInclude metisDecomp
+ wmakeLnInclude parMetisDecomp
+ wmakeLnInclude scotchDecomp
+ decompositionMethods/Allwmake
+ wmakeLnInclude decompositionMethods
+ wmake libso decompositionMethods
collect2: fatal error: cannot find 'ld'
compilation terminated.
make: *** [/home/SI/.root/opt/OpenFOAM/foam/foam-extend-4.0/wmake/Makefile:188: /home/SI/.root/opt/OpenFOAM/foam/foam-extend-4.0/lib/linux64GccDPOpt/libdecompositionMethods.so] Error 1
+ wmake libso metisDecomp
collect2: fatal error: cannot find 'ld'
compilation terminated.
make: *** [/home/SI/.root/opt/OpenFOAM/foam/foam-extend-4.0/wmake/Makefile:188: /home/SI/.root/opt/OpenFOAM/foam/foam-extend-4.0/lib/linux64GccDPOpt/libmetisDecomp.so] Error 1
+ wmake libso parMetisDecomp
SOURCE=parMetisDecomp.C ;  g++55 -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-200 -DOMPI_SKIP_MPICXX -I/usr/include/openmpi-x86_64 -pthread     -I/home/SI/.root/opt/OpenFOAM/foam/foam-extend-4.0/ThirdParty/packages/parmetis-4.0.3/platforms/linux64GccDPOpt/include     -I../decompositionMethods/lnInclude     -I../metisDecomp/lnInclude     -I../scotchDecomp/lnInclude -IlnInclude -I. -I/home/SI/.root/opt/OpenFOAM/foam/foam-extend-4.0/src/foam/lnInclude -I/home/SI/.root/opt/OpenFOAM/foam/foam-extend-4.0/src/OSspecific/POSIX/lnInclude   -fPIC -c $SOURCE -o Make/linux64GccDPOpt/parMetisDecomp.o
parMetisDecomp.C: In member function ‘Foam::label Foam::parMetisDecomp::decompose(Foam::Field<int>&, Foam::Field<int>&, const pointField&, Foam::Field<int>&, Foam::Field<int>&, const Foam::List<int>&, Foam::List<int>&)’:
parMetisDecomp.C:104:11: error: ‘real_t’ was not declared in this scope
     Field<real_t> xyz(3*cellCentres.size());
           ^
parMetisDecomp.C:104:17: error: template argument 1 is invalid
     Field<real_t> xyz(3*cellCentres.size());
                 ^
parMetisDecomp.C:109:20: error: invalid types ‘int[int]’ for array subscript
         xyz[compI++] = float(cc.x());
                    ^
parMetisDecomp.C:110:20: error: invalid types ‘int[int]’ for array subscript
         xyz[compI++] = float(cc.y());
                    ^
parMetisDecomp.C:111:20: error: invalid types ‘int[int]’ for array subscript
         xyz[compI++] = float(cc.z());
                    ^
parMetisDecomp.C:142:21: error: type/value mismatch at argument 1 in template parameter list for ‘template<class Type> class Foam::Field’
         Field<real_t> prevXyz(fromPrevProc);
                     ^
parMetisDecomp.C:142:21: note:   expected a type, got ‘real_t’
parMetisDecomp.C:142:43: error: invalid user-defined conversion from ‘Foam::IPstream’ to ‘int’ [-fpermissive]
         Field<real_t> prevXyz(fromPrevProc);
                                           ^
In file included from /home/SI/.root/opt/OpenFOAM/foam/foam-extend-4.0/src/foam/lnInclude/Ostream.H:39:0,
                 from /home/SI/.root/opt/OpenFOAM/foam/foam-extend-4.0/src/foam/lnInclude/OSstream.H:40,
                 from /home/SI/.root/opt/OpenFOAM/foam/foam-extend-4.0/src/foam/lnInclude/messageStream.H:220,
                 from /home/SI/.root/opt/OpenFOAM/foam/foam-extend-4.0/src/foam/lnInclude/error.H:51,
                 from /home/SI/.root/opt/OpenFOAM/foam/foam-extend-4.0/src/foam/lnInclude/HashTableI.H:26,
                 from /home/SI/.root/opt/OpenFOAM/foam/foam-extend-4.0/src/foam/lnInclude/HashTable.H:550,
                 from /home/SI/.root/opt/OpenFOAM/foam/foam-extend-4.0/src/foam/lnInclude/objectRegistry.H:38,
                 from /home/SI/.root/opt/OpenFOAM/foam/foam-extend-4.0/src/foam/lnInclude/polyMesh.H:43,
                 from ../decompositionMethods/lnInclude/decompositionMethod.H:38,
                 from parMetisDecomp.H:37,
                 from parMetisDecomp.C:26:
/home/SI/.root/opt/OpenFOAM/foam/foam-extend-4.0/src/foam/lnInclude/IOstream.H:366:13: note: candidate is: Foam::IOstream::operator void*() const <near match>
             operator void*() const
             ^
/home/SI/.root/opt/OpenFOAM/foam/foam-extend-4.0/src/foam/lnInclude/IOstream.H:366:13: note:   no known conversion from ‘void*’ to ‘int’
parMetisDecomp.C:161:29: error: no matching function for call to ‘Foam::parMetisDecomp::prepend(int&, int&)’
         prepend(prevXyz, xyz);
                             ^
In file included from parMetisDecomp.H:177:0,
                 from parMetisDecomp.C:26:
parMetisDecompTemplates.C:32:6: note: candidate: template<class Type> static void Foam::parMetisDecomp::prepend(const Foam::UList<T>&, Foam::List<T>&)
 void Foam::parMetisDecomp::prepend
      ^
parMetisDecompTemplates.C:32:6: note:   template argument deduction/substitution failed:
parMetisDecomp.C:161:29: note:   mismatched types ‘const Foam::UList<T>’ and ‘int’
         prepend(prevXyz, xyz);
                             ^
parMetisDecomp.C:185:31: error: type/value mismatch at argument 1 in template parameter list for ‘template<class Type> class Foam::SubField’
             << SubField<real_t>(xyz, nDims*nCells, nDims*startCell)
                               ^
parMetisDecomp.C:185:31: note:   expected a type, got ‘real_t’
parMetisDecomp.C:214:13: error: request for member ‘setSize’ in ‘xyz’, which is of non-class type ‘int’
         xyz.setSize(xyz.size()-nDims*nCells);
             ^
parMetisDecomp.C:214:25: error: request for member ‘size’ in ‘xyz’, which is of non-class type ‘int’
         xyz.setSize(xyz.size()-nDims*nCells);
                         ^
parMetisDecomp.C:270:17: error: type/value mismatch at argument 1 in template parameter list for ‘template<class Type> class Foam::Field’
     Field<real_t> tpwgts(nCon*nProcessors_, 1./nProcessors_);
                 ^
parMetisDecomp.C:270:17: note:   expected a type, got ‘real_t’
parMetisDecomp.C:270:60: error: expression list treated as compound expression in initializer [-fpermissive]
     Field<real_t> tpwgts(nCon*nProcessors_, 1./nProcessors_);
                                                            ^
parMetisDecomp.C:270:30: warning: left operand of comma operator has no effect [-Wunused-value]
     Field<real_t> tpwgts(nCon*nProcessors_, 1./nProcessors_);
                              ^
parMetisDecomp.C:272:17: error: type/value mismatch at argument 1 in template parameter list for ‘template<class Type> class Foam::Field’
     Field<real_t> ubvec(nCon, 1.02);
                 ^
parMetisDecomp.C:272:17: note:   expected a type, got ‘real_t’
parMetisDecomp.C:272:35: error: expression list treated as compound expression in initializer [-fpermissive]
     Field<real_t> ubvec(nCon, 1.02);
                                   ^
parMetisDecomp.C:272:35: warning: left operand of comma operator has no effect [-Wunused-value]
parMetisDecomp.C:276:16: error: invalid types ‘int[int]’ for array subscript
         ubvec[0] = 1;
                ^
parMetisDecomp.C:298:13: error: request for member ‘begin’ in ‘xyz’, which is of non-class type ‘int’
         xyz.begin(),
             ^
parMetisDecomp.C:301:16: error: request for member ‘begin’ in ‘tpwgts’, which is of non-class type ‘int’
         tpwgts.begin(),
                ^
parMetisDecomp.C:302:15: error: request for member ‘begin’ in ‘ubvec’, which is of non-class type ‘int’
         ubvec.begin(),
               ^
make: *** [parMetisDecomp.dep:343: Make/linux64GccDPOpt/parMetisDecomp.o] Error 1
.
.
.
.
Any subsequent messages are the same, it tries to make a file but exits with error cannot find ld.

Anyone have any idea why this is?
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Old   April 18, 2021, 00:15
Default Switched to GCC-53 and now i get different error's
  #2
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Sultan Islam
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Here is the log
Attached Files
File Type: zip log.zip (22.0 KB, 0 views)
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Old   April 18, 2021, 02:35
Default Compilation worked, but thirdparty failed
  #3
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Sultan Islam
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So the log is attached.

It seems on Fedora, shebang throws an error for pyfoam because you need to specify the python version in the header of the .py files. I am able to edit them, however running thirdparty allmake replaces them again with the older files. Is there away I can edit the thirdpary allwmake to make that not happen? Also the only error left is the error in the pametis decomp files, gcc--53 throws some errors I don't understand.
Attached Files
File Type: zip foam-extend-4.1.log.zip (22.1 KB, 0 views)

Last edited by EternalSeekerX; April 18, 2021 at 03:59.
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