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Old   February 29, 2020, 13:34
Default Need help with installation on cluster
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Hi,
Some time ago I installed OpenFOAM 3.0.x on the cluster following the procedure:

https://openfoamwiki.net/index.php/I...CentOS_SL_RHEL

starting from step 5 which basically uses software in ThirdParty-3.0.x folder rather than SYSTEM for compilation including the use of gcc 4.8. I only set the OpenMPI as SYSTEM for which I loaded the module OpenMPI/1.6.5-GCC-4.8.2. However the cluster has been updated to a new platform (including the gcc version which is now 6.4) and therefore this openmpi version is no longer available on the new platform. So the easiest thing I thought is to load one of the newer available openmpi versions such as OpenMPI/1.8.4-GCC-6 though it is compiled with a higher version of gcc. I recompiled openfoam without any issues and I can run in solvers in parallel.
However I have been encountering problems with compiling and/or running CFDEM.

Initially I was getting the following error during compilation:
Code:
gcc: error: unrecognized command line option '--showme:compile'
which I resolved by using
Code:
export WM_MPLIB=SYSTEMOPENMPI
which resolved the issue, though during compilation I see many lines mentioning some issue with mpi,
Code:
could not open file ompi/mpi/cxx/ …
But at the end of log file it mentions compilation is completed.

However I can’t run the solvers. For example when running one of the tutorials, I get the following error:
Code:
-------------------------------------------------------
Primary job  terminated normally, but 1 process returned
a non-zero exit code.. Per user-direction, the job has been aborted.
-------------------------------------------------------
cfdemSolverPiso: /data/cluster/acc32/OpenFOAM/ThirdParty-3.0.x/platforms/linux64/gcc-4.8.4/lib64/libstdc++.so.6: version `CXXABI_1.3.9' not found (required by /apps/cluster/skylake/2018a/software/OpenMPI/1.8.4-GCC-6.4.0-2.28/lib/libmpi_cxx.so.1)
cfdemSolverPiso: /data/cluster/acc32/OpenFOAM/ThirdParty-3.0.x/platforms/linux64/gcc-4.8.4/lib64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /apps/cluster/skylake/2018a/software/OpenMPI/1.8.4-GCC-6.4.0-2.28/lib/libmpi_cxx.so.1)
cfdemSolverPiso: /data/cluster/acc32/OpenFOAM/ThirdParty-3.0.x/platforms/linux64/gcc-4.8.4/lib64/libstdc++.so.6: version `CXXABI_1.3.9' not found (required by /apps/cluster/skylake/2018a/software/OpenMPI/1.8.4-GCC-6.4.0-2.28/lib/libmpi_cxx.so.1)
cfdemSolverPiso: /data/cluster/acc32/OpenFOAM/ThirdParty-3.0.x/platforms/linux64/gcc-4.8.4/lib64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /apps/cluster/skylake/2018a/software/OpenMPI/1.8.4-GCC-6.4.0-2.28/lib/libmpi_cxx.so.1)
I get same error when for the LIGGGHTS solver. I think the error is due to incompatibility between gccs 6.4 and 4.8. But why wouldn’t give error when compiling openfoam? is there an easy way to resolve this?

Thanks a lot for the help
Ali
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