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[OpenFOAM.org] Need help with installation on cluster |
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February 29, 2020, 13:34 |
Need help with installation on cluster
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#1 |
Member
Join Date: Jun 2015
Posts: 30
Rep Power: 11 |
Hi,
Some time ago I installed OpenFOAM 3.0.x on the cluster following the procedure: https://openfoamwiki.net/index.php/I...CentOS_SL_RHEL starting from step 5 which basically uses software in ThirdParty-3.0.x folder rather than SYSTEM for compilation including the use of gcc 4.8. I only set the OpenMPI as SYSTEM for which I loaded the module OpenMPI/1.6.5-GCC-4.8.2. However the cluster has been updated to a new platform (including the gcc version which is now 6.4) and therefore this openmpi version is no longer available on the new platform. So the easiest thing I thought is to load one of the newer available openmpi versions such as OpenMPI/1.8.4-GCC-6 though it is compiled with a higher version of gcc. I recompiled openfoam without any issues and I can run in solvers in parallel. However I have been encountering problems with compiling and/or running CFDEM. Initially I was getting the following error during compilation: Code:
gcc: error: unrecognized command line option '--showme:compile' Code:
export WM_MPLIB=SYSTEMOPENMPI Code:
could not open file ompi/mpi/cxx/ … However I can’t run the solvers. For example when running one of the tutorials, I get the following error: Code:
------------------------------------------------------- Primary job terminated normally, but 1 process returned a non-zero exit code.. Per user-direction, the job has been aborted. ------------------------------------------------------- cfdemSolverPiso: /data/cluster/acc32/OpenFOAM/ThirdParty-3.0.x/platforms/linux64/gcc-4.8.4/lib64/libstdc++.so.6: version `CXXABI_1.3.9' not found (required by /apps/cluster/skylake/2018a/software/OpenMPI/1.8.4-GCC-6.4.0-2.28/lib/libmpi_cxx.so.1) cfdemSolverPiso: /data/cluster/acc32/OpenFOAM/ThirdParty-3.0.x/platforms/linux64/gcc-4.8.4/lib64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /apps/cluster/skylake/2018a/software/OpenMPI/1.8.4-GCC-6.4.0-2.28/lib/libmpi_cxx.so.1) cfdemSolverPiso: /data/cluster/acc32/OpenFOAM/ThirdParty-3.0.x/platforms/linux64/gcc-4.8.4/lib64/libstdc++.so.6: version `CXXABI_1.3.9' not found (required by /apps/cluster/skylake/2018a/software/OpenMPI/1.8.4-GCC-6.4.0-2.28/lib/libmpi_cxx.so.1) cfdemSolverPiso: /data/cluster/acc32/OpenFOAM/ThirdParty-3.0.x/platforms/linux64/gcc-4.8.4/lib64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /apps/cluster/skylake/2018a/software/OpenMPI/1.8.4-GCC-6.4.0-2.28/lib/libmpi_cxx.so.1) Thanks a lot for the help Ali |
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