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February 21, 2014, 10:05 |
Paraview 4 with Redhat...is it possible?
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#1 |
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Hi to all,
I'm trying to build paraview with the command Code:
./makeParaView4 Code:
sed: can't read /openfoam/ThirdParty-2.3.0/ParaView-4.1.0/VTK/Utilities/kwsys/kwsysDateStamp.cmake: No such file or directory Code:
--------------------- Version information qt 4.8.5 version 4.1.0 major 4.1 MISMATCH! specified 4.1.0 found --------------------- Code:
[ 84%] Generating moc_pqProxy.cxx /openfoam/ThirdParty-2.3.0/build/linux64Gcc/ParaView-4.1.0/lib/libvtkGUISupportQt-pv4.1.so.1: undefined reference to `QListData::detach_grow(int*, int)' /openfoam/ThirdParty-2.3.0/build/linux64Gcc/ParaView-4.1.0/lib/libvtkGUISupportQt-pv4.1.so.1: undefined reference to `QListData::detach(int)' /openfoam/ThirdParty-2.3.0/build/linux64Gcc/ParaView-4.1.0/lib/libvtkGUISupportQt-pv4.1.so.1: undefined reference to `QAbstractProxyModel::setItemData(QModelIndex const&, QMap<int, QVariant> const&)' collect2: error: ld returned 1 exit status make[2]: *** [bin/pvserver] Error 1 make[1]: *** [CommandLineExecutables/CMakeFiles/pvserver.dir/all] Error 2 make[1]: *** Waiting for unfinished jobs.... Scanning dependencies of target PacMan [ 84%] [ 84%] Building CXX object CoProcessing/Catalyst/CMakeFiles/vtkPVCatalyst.dir/vtkCPInputDataDescription.cxx.o Generating moc_pqQVTKWidgetEventTranslator.cxx [ 84%] Building CXX object Plugins/TestPlugin/CMakeFiles/PacMan.dir/PacMan_Plugin.cxx.o [ 84%] /openfoam/ThirdParty-2.3.0/build/linux64Gcc/ParaView-4.1.0/lib/libvtkGUISupportQt-pv4.1.so.1: undefined reference to `QListData::detach_grow(int*, int)' /openfoam/ThirdParty-2.3.0/build/linux64Gcc/ParaView-4.1.0/lib/libvtkGUISupportQt-pv4.1.so.1: undefined reference to `QListData::detach(int)' /openfoam/ThirdParty-2.3.0/build/linux64Gcc/ParaView-4.1.0/lib/libvtkGUISupportQt-pv4.1.so.1: undefined reference to `QAbstractProxyModel::setItemData(QModelIndex const&, QMap<int, QVariant> const&)' collect2: error: ld returned 1 exit status make[2]: *** [bin/pvrenderserver] Error 1 make[1]: *** [CommandLineExecutables/CMakeFiles/pvrenderserver.dir/all] Error 2 Generating moc_pqQVTKWidget.cxx [ 84%] Building CXX object CoProcessing/Catalyst/CMakeFiles/vtkPVCatalyst.dir/vtkCPPipeline.cxx.o [ 84%] Generating moc_pqRecentlyUsedResourcesList.cxx [ 84%] Generating moc_pqRenderViewBase.cxx [ 84%] Generating moc_pqRenderView.cxx [ 84%] Generating moc_pqRepresentation.cxx [ 84%] [ 84%] Building CXX object CoProcessing/Catalyst/CMakeFiles/vtkPVCatalyst.dir/vtkCPProcessor.cxx.o Generating moc_pqRubberBandHelper.cxx [ 84%] Generating moc_pqScalarBarRepresentation.cxx Scanning dependencies of target NonOrthogonalSource [ 84%] [ 84%] Generating moc_pqScalarBarVisibilityAdaptor.cxx Building CXX object Plugins/NonOrthogonalSource/CMakeFiles/NonOrthogonalSource.dir/vtkShearedCubeSource.cxx.o [ 84%] Generating moc_pqScalarOpacityFunction.cxx [ 84%] /openfoam/ThirdParty-2.3.0/build/linux64Gcc/ParaView-4.1.0/lib/libvtkGUISupportQt-pv4.1.so.1: undefined reference to `QListData::detach_grow(int*, int)' /openfoam/ThirdParty-2.3.0/build/linux64Gcc/ParaView-4.1.0/lib/libvtkGUISupportQt-pv4.1.so.1: undefined reference to `QListData::detach(int)' /openfoam/ThirdParty-2.3.0/build/linux64Gcc/ParaView-4.1.0/lib/libvtkGUISupportQt-pv4.1.so.1: undefined reference to `QAbstractProxyModel::setItemData(QModelIndex const&, QMap<int, QVariant> const&)' collect2: error: ld returned 1 exit status make[2]: *** [bin/pvdataserver] Error 1 Building CXX object Plugins/NonOrthogonalSource/CMakeFiles/NonOrthogonalSource.dir/vtkShearedCubeSourceClientServer.cxx.o make[1]: *** [CommandLineExecutables/CMakeFiles/pvdataserver.dir/all] Error 2 I have installed qt version 4.8.5. How do I fix it? Is it possible? Thanks in advance. |
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February 22, 2014, 15:46 |
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#2 |
Retired Super Moderator
Bruno Santos
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Greetings ferdinando.forno,
I haven't tried this myself, but it should be possible. Have a look into this wiki page for ideas: http://openfoamwiki.net/index.php/In...HEL#CentOS_5.8 - section CentOS 5.8, steps 12 and 13. Best regards, Bruno
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February 24, 2014, 06:49 |
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#3 | |
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Hi Bruno,
if I am right the link you have posted is about ParaView 3.12.0. I have tried to modify instructions for ParaView 4.1 with no luck. Other suggestions? Best regards, Ferdinando Forno EDIT: Even if I try to build paraview from source, process fails. I installed QT 4.8.5, indeed: Code:
$ qmake --version QMake version 2.01a Using Qt version 4.8.5 in /usr/local/Trolltech/Qt-4.8.5/lib Code:
/openfoam/Software/ParaView-v4.1.0/ParaView-build/lib/libvtkGUISupportQt-pv4.1.so.1: undefined reference to `QMetaType::registerTypedef(char const*, int)' /openfoam/Software/ParaView-v4.1.0/ParaView-build/lib/libvtkGUISupportQt-pv4.1.so.1: undefined reference to `QListData::detach(int)' /openfoam/Software/ParaView-v4.1.0/ParaView-build/lib/libvtkGUISupportQt-pv4.1.so.1: undefined reference to `QAbstractProxyModel::setItemData(QModelIndex const&, QMap<int, QVariant> const&)' /openfoam/Software/ParaView-v4.1.0/ParaView-build/lib/libvtkGUISupportQt-pv4.1.so.1: undefined reference to `QListData::detach_grow(int*, int)' collect2: error: ld returned 1 exit status make[2]: *** [bin/SciberQuestToolKit-TestBOVIO] Error 1 make[1]: *** [Plugins/SciberQuestToolKit/SciberQuest/Testing/CMakeFiles/SciberQuestToolKit-TestBOVIO.dir/all] Error 2 make[1]: *** Waiting for unfinished jobs.... Quote:
Last edited by ferdinando.forno; February 25, 2014 at 11:22. |
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March 1, 2014, 19:46 |
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#4 |
Retired Super Moderator
Bruno Santos
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Hi Ferdinando,
I've finished writing and testing the following instructions on CentOS 6.5: http://openfoamwiki.net/index.php/In...HEL#CentOS_6.5 So it should work on RHEL 6.5 as well. I didn't try to use Qt 4.8.5, because at that time I forgot that there was already 4.8.5, so I went with 4.8.4. Let me know if it works for your or if you're using another version of RHEL. Best regards, Bruno
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March 3, 2014, 07:21 |
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#5 | |
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Hi bruno,
I'm trying to follow your guide even if I have RHEL 6.3. I have a problem with step nine: Code:
./getGcc gcc-4.8.1 gmp-5.1.2 mpfr-3.1.2 mpc-1.0.1 downloading gmp-5.1.2.tar.bz2 from ftp://ftp.gnu.org/gnu/gmp/gmp-5.1.2.tar.bz2 --2014-03-03 12:07:02-- ftp://ftp.gnu.org/gnu/gmp/gmp-5.1.2.tar.bz2 => “gmp-5.1.2.tar.bz2” Resolving localhost... ::1, 127.0.0.1 Connecting to localhost|::1|:3128... failed: Connection refused. Connecting to localhost|127.0.0.1|:3128... connected. Logging in as anonymous ... Thanks in advance. Best regards, Ferdinando Quote:
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March 3, 2014, 08:13 |
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#6 |
Retired Super Moderator
Bruno Santos
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Hi Ferdinando,
Then you'll need to download the files manually. When you run the getGcc script, it tells you which files it tries to download, for example: Code:
downloading gmp-5.1.2.tar.bz2 from ftp://ftp.gnu.org/gnu/gmp/gmp-5.1.2.tar.bz2 Code:
ftp://ftp.gnu.org/gnu/gmp/gmp-5.1.2.tar.bz2 If the script locks up trying to download a file, use Ctrl+C, download the file manually and place the file inside the folder mentioned above. Then run the script again and it will ask for another file, since the other one is already done. Best regards, Bruno
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March 4, 2014, 05:42 |
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#7 | |
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Hi bruno,
I wish to thank you. I have successfully built those packages. Now I have another problem with ./makeCmake (point 12 of the installation guide). I got this error: Code:
Linking CXX executable ../bin/ccmake /opt/centos/devtoolset-1.0/root/usr/libexec/gcc/x86_64-redhat-linux/4.7.0/ld: CMakeFiles/ccmake.dir/CursesDialog/cmCursesMainForm.cxx.o: undefined reference to symbol 'keypad' /opt/centos/devtoolset-1.0/root/usr/libexec/gcc/x86_64-redhat-linux/4.7.0/ld: note: 'keypad' is defined in DSO /lib64/libtinfo.so.5 so try adding it to the linker command line /lib64/libtinfo.so.5: could not read symbols: Invalid operation collect2: error: ld returned 1 exit status Code:
/openfoam/ThirdParty-2.3.0/platforms/linux64/gcc-4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/../../../../x86_64-unknown-linux-gnu/bin/ld: CMakeFiles/ccmake.dir/CursesDialog/cmCursesMainForm.cxx.o: undefined reference to symbol 'keypad' /openfoam/ThirdParty-2.3.0/platforms/linux64/gcc-4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/../../../../x86_64-unknown-linux-gnu/bin/ld: note: 'keypad' is defined in DSO /lib64/libtinfo.so.5 so try adding it to the linker command line /lib64/libtinfo.so.5: could not read symbols: Invalid operation collect2: error: ld returned 1 exit status make[2]: *** [bin/ccmake] Error 1 make[1]: *** [Source/CMakeFiles/ccmake.dir/all] Error 2 Thanks in advance. Best regards, Ferdinando Forno Quote:
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March 4, 2014, 06:21 |
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#8 |
Retired Super Moderator
Bruno Santos
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Hi Ferdinando,
I did a quick search online and the problem seems to be related to the GCC version used. You can use the default GCC installation that RHEL has got, for building CMake and it should work as intended. To do so, run: Code:
export CC=/usr/bin/gcc export CXX=/usr/bin/g++ ./makeCmake Bruno
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March 4, 2014, 08:43 |
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#9 | |
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Hi Bruno,
thanks for you constant support. I have tried with your export commands but it gives me that error again (log attached) Any hints? Thanks in advance, Ferdinando Forno Quote:
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March 4, 2014, 09:53 |
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#11 |
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Hi Bruno,
even with these command, I get that error I think It switches to thirdParty compiler during building. In the attached log you can see: Code:
-- The C compiler identification is GNU 4.8.1 -- The CXX compiler identification is GNU 4.8.1 -- Check for working C compiler: /openfoam/ThirdParty-2.3.0/platforms/linux64/gcc-4.8.1/bin/gcc -- Check for working C compiler: /openfoam/ThirdParty-2.3.0/platforms/linux64/gcc-4.8.1/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /openfoam/ThirdParty-2.3.0/platforms/linux64/gcc-4.8.1/bin/g++ -- Check for working CXX compiler: /openfoam/ThirdParty-2.3.0/platforms/linux64/gcc-4.8.1/bin/g++ -- works Thanks. Best regards, Ferdinando |
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March 4, 2014, 10:22 |
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#12 |
Retired Super Moderator
Bruno Santos
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Sorry again, I should have checked the contents of the script "makeCmake". The script has these two lines:
Code:
[ -n "$WM_CXX" ] && export CXX="$WM_CXX" [ -n "$WM_CC" ] && export CC="$WM_CC" Code:
export CC=/usr/bin/gcc export CXX=/usr/bin/g++ export LD=/usr/bin/ld export WM_CXX=$CXX export WM_CC=$CC ./makeCmake |
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March 4, 2014, 11:15 |
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#13 | |
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Hi,
I have commented out those line and I have run Code:
export CC=/usr/bin/gcc export CXX=/usr/bin/g++ export LD=/usr/bin/ld export WM_CXX=$CXX export WM_CC=$CC ./makeCmake Code:
Building CXX object Source/CMakeFiles/CTestLib.dir/CTest/cmCTestMemCheckCommand.cxx.o /openfoam/ThirdParty-2.3.0/platforms/linux64/gcc-4.8.1/bin/ld: CMakeFiles/ccmake.dir/CursesDialog/cmCursesMainForm.cxx.o: undefined reference to symbol 'keypad' /openfoam/ThirdParty-2.3.0/platforms/linux64/gcc-4.8.1/bin/ld: note: 'keypad' is defined in DSO /lib64/libtinfo.so.5 so try adding it to the linker command line /lib64/libtinfo.so.5: could not read symbols: Invalid operation collect2: ld returned 1 exit status make[2]: *** [bin/ccmake] Error 1 make[1]: *** [Source/CMakeFiles/ccmake.dir/all] Error 2 Code:
Starting build: cmake-2.8.12.1 --------------------------------------------- CMake 2.8.12.1, Copyright 2000-2012 Kitware, Inc. C compiler on this system is: /usr/bin/gcc C++ compiler on this system is: /usr/bin/g++ Makefile processor on this system is: gmake /usr/bin/g++ is GNU compiler Best regards, Ferdinando Forno Quote:
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March 4, 2014, 11:33 |
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#14 |
Retired Super Moderator
Bruno Santos
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Sometimes things will only work if we use a crowbar
Try this: Code:
mv $WM_THIRD_PARTY_DIR/platforms/linux64/gcc-4.8.1 $WM_THIRD_PARTY_DIR/platforms/linux64/gcc-4.8.1.bak ./makeCmake mv $WM_THIRD_PARTY_DIR/platforms/linux64/gcc-4.8.1.bak $WM_THIRD_PARTY_DIR/platforms/linux64/gcc-4.8.1 |
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March 4, 2014, 11:55 |
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#15 | |
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I have no luck:
Code:
/opt/centos/devtoolset-1.0/root/usr/bin/ld: CMakeFiles/ccmake.dir/CursesDialog/cmCursesMainForm.cxx.o: undefined reference to symbol 'keypad' /opt/centos/devtoolset-1.0/root/usr/bin/ld: note: 'keypad' is defined in DSO /lib64/libtinfo.so.5 so try adding it to the linker command line /lib64/libtinfo.so.5: could not read symbols: Invalid operation collect2: ld returned 1 exit status make[2]: *** [bin/ccmake] Error 1 make[1]: *** [Source/CMakeFiles/ccmake.dir/all] Error 2 make[1]: *** Waiting for unfinished jobs.... What is wrong with RHEL? Quote:
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March 4, 2014, 12:16 |
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#16 |
Retired Super Moderator
Bruno Santos
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Ah, I don't know how exactly you're loading "devtoolset-1.0" into the shell environment, but make sure that you start a new shell environment without it.
This is because that toolset also uses a more recent GCC+Binutils versions, which is breaking the build with CMake |
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March 4, 2014, 12:53 |
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#17 | |
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Hi Bruno,
even with compilers installed Paraview doesn't build. Code:
[openfoam@danbtopenfoam ~]$ OF230 [openfoam@danbtopenfoam ~]$ gcc --version gcc (OpenFOAM) 4.8.1 Copyright (C) 2013 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. [openfoam@danbtopenfoam ~]$ g++ --version g++ (OpenFOAM) 4.8.1 Copyright (C) 2013 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. [openfoam@danbtopenfoam ~]$ ld --version GNU ld (GNU Binutils) 2.23 Copyright 2012 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) a later version. This program has absolutely no warranty. [openfoam@danbtopenfoam ~]$ cmake --version cmake version 2.8.12.1 [openfoam@danbtopenfoam ~]$ qmake --version QMake version 2.01a Using Qt version 4.8.5 in /usr/local/Trolltech/Qt-4.8.5/lib Code:
[ 84%] /openfoam/ThirdParty-2.3.0/build/linux64Gcc48/ParaView-4.1.0/lib/libvtkGUISupportQt-pv4.1.so.1: undefined reference to `QListData::detach_grow(int*, int)' /openfoam/ThirdParty-2.3.0/build/linux64Gcc48/ParaView-4.1.0/lib/libvtkGUISupportQt-pv4.1.so.1: undefined reference to `QListData::detach(int)' /openfoam/ThirdParty-2.3.0/build/linux64Gcc48/ParaView-4.1.0/lib/libvtkGUISupportQt-pv4.1.so.1: undefined reference to `QAbstractProxyModel::setItemData(QModelIndex const&, QMap<int, QVariant> const&)' collect2: error: ld returned 1 exit status [ 84%] make[2]: *** [bin/pvserver] Error 1 make[1]: *** [CommandLineExecutables/CMakeFiles/pvserver.dir/all] Error 2 make[1]: *** Waiting for unfinished jobs.... Generating Documentation HTMLs from xmls [ 84%] Generating moc_pqServerConfigurationCollection.cxx Generating moc_pqServer.cxx /openfoam/ThirdParty-2.3.0/build/linux64Gcc48/ParaView-4.1.0/lib/libvtkGUISupportQt-pv4.1.so.1: undefined reference to `QListData::detach_grow(int*, int)' /openfoam/ThirdParty-2.3.0/build/linux64Gcc48/ParaView-4.1.0/lib/libvtkGUISupportQt-pv4.1.so.1: undefined reference to `QListData::detach(int)' /openfoam/ThirdParty-2.3.0/build/linux64Gcc48/ParaView-4.1.0/lib/libvtkGUISupportQt-pv4.1.so.1: undefined reference to `QAbstractProxyModel::setItemData(QModelIndex const&, QMap<int, QVariant> const&)' collect2: error: ld returned 1 exit status /openfoam/ThirdParty-2.3.0/build/linux64Gcc48/ParaView-4.1.0/mak/*** [bin/pvdataser- v4.1.so.1: undefined reference to `QListData::detach_grow(int*, int)' /openfoam/ThirdParty-2.3.0/build/linux64Gcc48/ParaView-4.1.0/lib/libvtkGUISupportQt-pv4.1.so.1: undefined reference to `QListData::detach(int)' /openfoam/ThirdParty-2.3.0/build/linux64Gcc48/ParaViewm4.1.0*lib/libvtkGUISupportQt-pv4.1.so.1: undefined reference to `QAbstractProxyModel::setItemData(QModelIndex const&, QMap<int, QVariant> const&)' collect2: error: ld returned 1 exit status make[2]: *** [bin/pvrenderserver] Error 1 make[1]: *** [CommandLineExecutables/CMakeFiles/pvrenderserver.dir/all] Error 2 Any suggestions? Thanks in advance. Best regards, Ferdinando Forno Hi bruno, finally I have compiled cmake removing devtoolset-1.0 from PATH. Now I'm trying to compile Paraview with Code:
./makeParaView4 PARAVIEW_INSTALL_THIRD_PARTY_LIBRARIES:BOOL=ON Thanks for all. Best regards, Ferdinando Quote:
Last edited by ferdinando.forno; March 6, 2014 at 05:32. |
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March 5, 2014, 12:03 |
qt4 compilation problem
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#18 |
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Location: Greece - Hellas
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I went through what is described here and webpage "Installation/Linux/OpenFOAM-2.3.0/CentOS SL RHEL", but I firstly faced problem with CGAL compilation.
I believe that I overcame this barrier following the instruction from http://www.openfoam.org/download/source.php but I am not sure since I am not familiar with Linux OS At the continue, I received error from the qt4.8.4 compilation. Attached you may find the log file from the qt compilation I 'd appreciate any help on this matter Thanks in advance |
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March 5, 2014, 16:09 |
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#19 |
Retired Super Moderator
Bruno Santos
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Greetings dfeid,
That's a strange error message you've gotten in the log file. A few questions:
Keep in mind that the instructions were designed to be followed to the letter. If you miss one single command, or even just one letter, whichever one it is, it's likely to fail building the necessary packages . Best regards, Bruno
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March 5, 2014, 17:06 |
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#20 |
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Dear Bruno
First of all thanks for your prompt answer Going at the row of your questions 1. I am using CentOS 6.5 x86_64 Linux distribution 2. The version of the tools is given below: Code:
[Dimitris@CFD13 ~]$ of230 [Dimitris@CFD13 ~]$ gcc --version gcc (OpenFOAM) 4.8.1 Copyright (C) 2013 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. [Dimitris@CFD13 ~]$ g++ --version g++ (OpenFOAM) 4.8.1 Copyright (C) 2013 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. [Dimitris@CFD13 ~]$ ld --version GNU ld (GNU Binutils) 2.23 Copyright 2012 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) a later version. This program has absolutely no warranty. [Dimitris@CFD13 ~]$ cmake --version cmake version 2.8.12.1 Because I didn't managed to get a solution with this. I decided to install the binary files following the step 1 from the Source Pack Installation of OpenFOAM webpage giving the followings: Code:
yum-config-manager --nogpgcheck --add-repo http://dl.atrpms.net/el6-x86_64/atrpms/stable yum install --nogpgcheck qtwebkit qtwebkit-devel yum install --nogpgcheck CGAL CGAL-devel I hope with my writings that you could be able to have a view of the situation Thanks again Best regards Dimitris Last edited by dfeid; March 5, 2014 at 17:11. Reason: Forgot to attach file |
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Tags |
paraview, qmake, rhel6 |
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