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mpicc link doesn't update when moving OF 2.2.1 installation |
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October 17, 2013, 18:43 |
mpicc link doesn't update when moving OF 2.2.1 installation
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#1 |
Member
Brock Lee
Join Date: Sep 2012
Location: Midwest
Posts: 40
Rep Power: 14 |
Hey guys, I've got a bit of a problem. I'm compiling OF 2.2.1 from the source on a cluster inside my home directory. The compilation goes without a hitch. I'm using the OpenMPI included with OF. After testing in my home directory, I decided to move it to another location so that other users can access it. These are the steps I followed to move the install...
1.) Copied OpenFOAM-2.2.1 and ThirdParty-2.2.1 folders to new location 2.) Updated the new install directory inside OpenFOAM-2.2.1/etc/bashrc 3.) Changed my .bashrc file to source the shared OpenFOAM install instead of the one I had in my home directory. At this point I closed down the terminal and re-opened a fresh one and once again did some testing. Everything was working great until I deleted my local home directory install. At that point OpenMPI started to fail on parallel runs. After some investigation, I found that the link to mpicc was still referring to the old location. The command... Code:
mpicc --showme:link So my questions are... 1.) How do I fix this? 2.) Is there a way to fix this at compile time? In previous OF installs I never had this issue. But it seems like there are multiple library files that get hard linked to the original install location in this implementation. Thanks! Last edited by GRAUPS; October 17, 2013 at 19:35. Reason: Added additional details |
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October 19, 2013, 08:45 |
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#2 |
Retired Super Moderator
Bruno Santos
Join Date: Mar 2009
Location: Lisbon, Portugal
Posts: 10,981
Blog Entries: 45
Rep Power: 128 |
Greetings Brock,
Apparently there is a glitch somewhere in Open-MPI 1.6.3 that requires to have the following two variables defined manually: Code:
export OPAL_PREFIX=/cluster/opt/OpenFOAM/openmpi-1.6.3 export OPAL_LIBDIR=/cluster/opt/OpenFOAM/openmpi-1.6.3/lib64 It's possible that the problem is that it's thinking about "$OPAL_PREFIX/lib" instead of "$OPAL_PREFIX/lib64", when it uses the variable "OPAL_PREFIX" defined by OpenFOAM's environment scripts. You can simply add the following line after the environment is ready: Code:
export OPAL_LIBDIR=$OPAL_PREFIX/lib64 Best regards, Bruno PS: Feel free to report this to OpenFOAM's bug tracker: http://www.openfoam.org/bugs/
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Tags |
compile, installation, move, mpicc |
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