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[OpenFOAM.org] Patches to compile OpenFOAM 2.2 on Mac OS X |
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March 10, 2014, 15:25 |
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#122 | |
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Bernhard Gschaider
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March 17, 2014, 07:31 |
Problems with 2.2.x latest built
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#123 | |
New Member
Michael
Join Date: Dec 2011
Location: Geneva
Posts: 28
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Dear all,
now it hit me trying to get a running copy of the last OpenFOAM 2.2.x built from Code:
mpmp:OpenFOAM-2.2.x mplagge$ git show commit 61b850bc107bdd60bbf1bf9a6417b9faf701d128 Merge: 3743359 68ae524 Author: andy <andy> Date: Wed Feb 26 16:43:52 2014 +0000 I noticed quickly that openmpicc was not used by allwmake for building Scotch. So I had a look at the patches and not being an expert I applied also the newMacPortsMPIThirdParty.patch. The second run openmpicc was used. However, as soon as finishing ThirdParty tools there is a strange gcc error occuring that I never had before: Code:
... /opt/local/include/gcc46/c++/cwchar:66:11: error: '::mbstate_t' has not been declared /opt/local/include/gcc46/c++/cwchar:141:11: error: '::wint_t' has not been declared /opt/local/include/gcc46/c++/cwchar:143:11: error: '::btowc' has not been declared /opt/local/include/gcc46/c++/cwchar:144:11: error: '::fgetwc' has not been declared ... https://box.cern.ch/public.php?servi...a28f082c2c0148 I would really appreciate any help. Thanks in advance. Cheers, Michael Quote:
SOLVED: Bloody damn stupid beginner mistake: disk image was not case sensitive. Layer 8, right in front of the machine. -.- Last edited by lithos; March 17, 2014 at 13:33. |
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March 19, 2014, 19:03 |
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#124 |
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Bernhard Gschaider
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It's a good thing that I'm two days behind with answering the message board stuff. It's much more satisfying to find the mistake yourself, right? (and my first impression was "looks familiar, but I can't remember what the cause is")
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March 20, 2014, 06:21 |
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#125 |
New Member
Michael
Join Date: Dec 2011
Location: Geneva
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Dear Bernhard,
one day I'll show you our archive of keyboards and desk tops, the ones with the bite marks... However, could you please let me know what should be the setting for WM_MPLIB with your patches? I added the full patch and newMacPortsMPIThirdParty with 2.2.x and I get: Code:
mpmp:motorBike mplagge$ openmpirun -np 6 snappyHexMesh -parallel -overwrite ------------------------------------------------------- Primary job terminated normally, but 1 process returned a non-zero exit code.. Per user-direction, the job has been aborted. ------------------------------------------------------- -------------------------------------------------------------------------- openmpirun detected that one or more processes exited with non-zero status, thus causing the job to be terminated. The first process to do so was: Process name: [[46715,1],5] Exit code: 1 Cheers, Michael |
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March 20, 2014, 15:11 |
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#126 | |||
Assistant Moderator
Bernhard Gschaider
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Quote:
http://fatpenguinblog.com/wp-content...tyKeyboard.jpg (No. The patch does not hack your webcam. I was only guessing ) Quote:
Quote:
Are you using an outdated MacPorts (do a "port selfupdate; port upgrade outdated") or a self-compiled OpenMPI (honorable but I can't help you there. I avoid compiling stuff)?
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March 24, 2014, 11:51 |
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#127 | |
New Member
Michael
Join Date: Dec 2011
Location: Geneva
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Dear Bernhard,
thanks for your comments. I did a complete selfupdate and upgrade of the outdated stuff, a lot of things have been relinked. The following run of Allwmake was successful. However, I dont see any mpicc use anymore in the log file as before. And I agree with you on the compilation stuff. That is why I avoid regularly to get the newest port and git version: it creates more trouble than it helps usually. In the end I did a Code:
ln -s /opt/local/bin/mpiexec-openmpi-gcc46 $WM_PROJECT_DIR/bin/mpirun Cheers, Michael Quote:
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March 25, 2014, 11:01 |
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#128 | |
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Bernhard Gschaider
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March 30, 2014, 16:56 |
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#129 | |
New Member
Michael
Join Date: Dec 2011
Location: Geneva
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Quote:
Code:
Available versions for gcc: llvm-gcc42 mp-gcc46 (active) mp-gcc47 mp-gcc48 none Code:
Available versions for mpi: mpich-mp-fortran none openmpi-gcc46-fortran (active) openmpi-mp-fortran |
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April 12, 2014, 08:30 |
makefile for scotch
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#130 |
New Member
malu
Join Date: Jun 2013
Posts: 8
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Hi all,
I'm trying to install open foam on my macbook. I followed all the appropriate instructions in wiki page. once i did the './Allwmake 2>&1 | tee logName.log', I found some errors and the first error says 'Error: Scotch needs an appropriate makeFile.inc'. I don't understand whats wrongs and what i have to do next. Any help is much appreciated. Thanks |
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April 14, 2014, 20:32 |
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#131 | |
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Bernhard Gschaider
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April 14, 2014, 21:22 |
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#132 | |
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malu
Join Date: Jun 2013
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Quote:
************************************************* Build Scotch decomposition library scotch_6.0.0 /Users/mharibabu/OpenFOAM/ThirdParty-2.2.2/platforms/darwinIntel64Gcc46/scotch_6.0.0 + cd scotch_6.0.0/src + prefixDIR=/Users/mharibabu/OpenFOAM/ThirdParty-2.2.2/platforms/darwinIntel64Gcc46/scotch_6.0.0 + libDIR=/Users/mharibabu/OpenFOAM/ThirdParty-2.2.2/platforms/darwinIntel64Gcc46DPOpt/lib + mkdir -p /Users/mharibabu/OpenFOAM/ThirdParty-2.2.2/platforms/darwinIntel64Gcc46/scotch_6.0.0 + mkdir -p /Users/mharibabu/OpenFOAM/ThirdParty-2.2.2/platforms/darwinIntel64Gcc46DPOpt/lib + configOpt='prefix=/Users/mharibabu/OpenFOAM/ThirdParty-2.2.2/platforms/darwinIntel64Gcc46/scotch_6.0.0 libdir=/Users/mharibabu/OpenFOAM/ThirdParty-2.2.2/platforms/darwinIntel64Gcc46DPOpt/lib' + '[' -f ../../etc/wmakeFiles/scotch/Makefile.inc.i686_mac_darwin.shlib-OpenFOAM ']' + '[' -f Makefile.inc ']' + echo ' Error: scotch needs an appropriate Makefile.inc' Error: scotch needs an appropriate Makefile.inc + exit 1 WARNING: required include file 'scotch.h' not found! ************************************************** ***** What do you think is the problem here? Thanks Malu |
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April 24, 2014, 19:37 |
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#133 | |
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Bernhard Gschaider
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December 29, 2014, 02:40 |
scotch compilation issues after using the latest full patch (2014-02-17 version)
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#134 |
Member
Vishal Achasrya
Join Date: Nov 2011
Posts: 38
Rep Power: 15 |
I am having the same problem with scotch.
The scotch Makefile is present and accounted for and I also checked its contents in the appropriate linked location, but despite that, scotch is not being compiled. It still creates a dummy scotch and ptscotch library. I have applied all patches, and made all the softlinks and all serial runs work. I am using the latest MacPorts in 10.10 Yosemite. There are no more openmpi files.... everything is mpirun-openmpi-mp and mpicc-openmpi-mp etc. Im wondering if this is the issue? Below is a snippet showing just the scotch and ptscotch compilation part and its errors: Code:
Build Scotch decomposition library scotch_6.0.0 /Users/vishalacharya/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46/scotch_6.0.0 + cd scotch_6.0.0/src + prefixDIR=/Users/vishalacharya/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46/scotch_6.0.0 + mkdir -p /Users/vishalacharya/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46/scotch_6.0.0 + configOpt='prefix=/Users/vishalacharya/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46/scotch_6.0.0 libdir=/Users/vishalacharya/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46DPOpt/lib' + '[' -f ../../etc/wmakeFiles/scotch/Makefile.inc.i686_mac_darwin.shlib-OpenFOAM ']' + ln -s ../../etc/wmakeFiles/scotch/Makefile.inc.i686_mac_darwin.shlib-OpenFOAM Makefile.inc + make -j 1 CC=gcc-mp-4.6 CCS=gcc-mp-4.6 scotch WARNING: required include file 'scotch.h' not found! Build PTScotch decomposition library scotch_6.0.0 (uses MPI) /Users/vishalacharya/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46/scotch_6.0.0 + cd scotch_6.0.0/src + prefixDIR=/Users/vishalacharya/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46/scotch_6.0.0 + incDIR=/Users/vishalacharya/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46/scotch_6.0.0/include/openmpi-system + mkdir -p /Users/vishalacharya/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46/scotch_6.0.0 + configOpt='prefix=/Users/vishalacharya/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46/scotch_6.0.0 libdir=/Users/vishalacharya/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46DPOpt/lib/openmpi-system includedir=/Users/vishalacharya/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46/scotch_6.0.0/include/openmpi-system' + '[' -f ../../etc/wmakeFiles/scotch/Makefile.inc.i686_mac_darwin.shlib-OpenFOAM ']' + ln -s ../../etc/wmakeFiles/scotch/Makefile.inc.i686_mac_darwin.shlib-OpenFOAM Makefile.inc + make -j 1 CC=gcc-mp-4.6 CCS=gcc-mp-4.6 ptscotch WARNING: required include file 'ptscotch.h' not found! + wmakeLnInclude scotchDecomp wmakeLnInclude: linking include files to scotchDecomp/lnInclude + wmakeLnInclude ptscotchDecomp wmakeLnInclude: linking include files to ptscotchDecomp/lnInclude + wmake libso scotchDecomp SOURCE=dummyScotchDecomp.C ; g++-mp-4.6 -m64 -fsignaling-nans -ftrapping-math -DdarwinIntel64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O2 -DNoRepository -ftemplate-depth-100 -I/Users/vishalacharya/OpenFOAM/OpenFOAM-2.2.x/src/parallel/decompose/decompositionMethods/lnInclude -I/Users/vishalacharya/OpenFOAM/OpenFOAM-2.2.x/src/parallel/decompose/scotchDecomp/lnInclude -IlnInclude -I. -I/Users/vishalacharya/OpenFOAM/OpenFOAM-2.2.x/src/OpenFOAM/lnInclude -I/Users/vishalacharya/OpenFOAM/OpenFOAM-2.2.x/src/OSspecific/POSIX/lnInclude -fPIC -Ddarwin -c $SOURCE -o Make/darwinIntel64Gcc46DPOpt/dummyScotchDecomp.o '/Users/vishalacharya/OpenFOAM/OpenFOAM-2.2.x/platforms/darwinIntel64Gcc46DPOpt/lib/dummy/libscotchDecomp.dylib' is up to date. + wmake libso ptscotchDecomp Making dependency list for source file dummyPtscotchDecomp.C SOURCE=dummyPtscotchDecomp.C ; g++-mp-4.6 -m64 -fsignaling-nans -ftrapping-math -DdarwinIntel64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O2 -DNoRepository -ftemplate-depth-100 -I/Users/vishalacharya/OpenFOAM/OpenFOAM-2.2.x/src/parallel/decompose/decompositionMethods/lnInclude -I/Users/vishalacharya/OpenFOAM/OpenFOAM-2.2.x/src/parallel/decompose/ptscotchDecomp/lnInclude -IlnInclude -I. -I/Users/vishalacharya/OpenFOAM/OpenFOAM-2.2.x/src/OpenFOAM/lnInclude -I/Users/vishalacharya/OpenFOAM/OpenFOAM-2.2.x/src/OSspecific/POSIX/lnInclude -fPIC -Ddarwin -c $SOURCE -o Make/darwinIntel64Gcc46DPOpt/dummyPtscotchDecomp.o '/Users/vishalacharya/OpenFOAM/OpenFOAM-2.2.x/platforms/darwinIntel64Gcc46DPOpt/lib/dummy/libptscotchDecomp.dylib' is up to date. using SCOTCH_ARCH_PATH=/Users/vishalacharya/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46/scotch_6.0.0 + '[' -n /Users/vishalacharya/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46/scotch_6.0.0 ']' + wmake libso scotchDecomp Making dependency list for source file scotchDecomp.C could not open file scotch.h for source file scotchDecomp.C SOURCE=scotchDecomp.C ; g++-mp-4.6 -m64 -fsignaling-nans -ftrapping-math -DdarwinIntel64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O2 -DNoRepository -ftemplate-depth-100 -DOMPI_SKIP_MPICXX -I/usr/local/include -I/include -I/Users/vishalacharya/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46/scotch_6.0.0/include -I/usr/include/scotch -I../decompositionMethods/lnInclude -IlnInclude -I. -I/Users/vishalacharya/OpenFOAM/OpenFOAM-2.2.x/src/OpenFOAM/lnInclude -I/Users/vishalacharya/OpenFOAM/OpenFOAM-2.2.x/src/OSspecific/POSIX/lnInclude -fPIC -Ddarwin -c $SOURCE -o Make/darwinIntel64Gcc46DPOpt/scotchDecomp.o ld: library not found for -lscotch make: *** [/Users/vishalacharya/OpenFOAM/OpenFOAM-2.2.x/platforms/darwinIntel64Gcc46DPOpt/lib/libscotchDecomp.dylib] Error 1 + '[' scotch_6.0.0 = scotch_6.0.0 ']' + export LINK_FLAGS=-lscotch + LINK_FLAGS=-lscotch + wmakeMpiLib ptscotchDecomp wclean ptscotchDecomp wmake libso ptscotchDecomp Making dependency list for source file ptscotchDecomp.C could not open file omp.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/pmpicxx.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/constants.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/functions.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/datatype.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/exception.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/op.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/status.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/request.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/group.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/comm.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/win.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/file.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/errhandler.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/intracomm.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/topology.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/intercomm.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/info.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/pop_inln.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/pgroup_inln.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/pstatus_inln.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/prequest_inln.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/datatype_inln.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/functions_inln.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/request_inln.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/comm_inln.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/intracomm_inln.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/topology_inln.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/intercomm_inln.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/group_inln.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/op_inln.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/errhandler_inln.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/status_inln.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/info_inln.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/win_inln.h for source file ptscotchDecomp.C could not open file ompi/mpi/cxx/file_inln.h for source file ptscotchDecomp.C could not open file ptscotch.h for source file ptscotchDecomp.C SOURCE=ptscotchDecomp.C ; g++-mp-4.6 -m64 -fsignaling-nans -ftrapping-math -DdarwinIntel64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O2 -DNoRepository -ftemplate-depth-100 -DOMPI_SKIP_MPICXX -I/usr/local/include -I/include -I/Users/vishalacharya/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46/scotch_6.0.0/include/openmpi-system -I/usr/include/scotch -I../decompositionMethods/lnInclude -IlnInclude -I. -I/Users/vishalacharya/OpenFOAM/OpenFOAM-2.2.x/src/OpenFOAM/lnInclude -I/Users/vishalacharya/OpenFOAM/OpenFOAM-2.2.x/src/OSspecific/POSIX/lnInclude -fPIC -Ddarwin -c $SOURCE -o Make/darwinIntel64Gcc46DPOptSYSTEMOPENMPI/ptscotchDecomp.o ptscotchDecomp.C: In member function 'Foam::label Foam::ptscotchDecomp::decompose(const Foam::fileName&, int, const int*, int, const int*, const scalarField&, Foam::List<int>&) const': ptscotchDecomp.C:551:39: warning: use of old-style cast [-Wold-style-cast] ptscotchDecomp.C:551:39: warning: use of old-style cast [-Wold-style-cast] ld: library not found for -lptscotch make: *** [/Users/vishalacharya/OpenFOAM/OpenFOAM-2.2.x/platforms/darwinIntel64Gcc46DPOpt/lib/openmpi-system/libptscotchDecomp.dylib] Error 1 Last edited by wyldckat; December 29, 2014 at 15:08. Reason: Added [CODE][/CODE] |
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December 5, 2015, 04:30 |
Installation on Mac El Capitain
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#135 |
New Member
Join Date: Apr 2013
Posts: 7
Rep Power: 13 |
Hello everyone
I'm experiencing some problems trying to install OpenFOAM 2.2.2 on MAC OS El Capitain. I followed the tutorial http://openfoamwiki.net/index.php/In...OpenFOAM_2.2.2. I used the patch OpenFOAM-2.2.x-Mac_2014-02-17.patch but it says: Marcos-MacBook-Pro:OpenFOAM-2.2.2 ferra_marco$ patch -p1<OpenFOAM-2.2.x-Mac_2014-02-17.patch patching file applications/solvers/combustion/fireFoam/Make/options patching file applications/solvers/compressible/rhoSimpleFoam/rhoSimplecFoam/Make/options patching file applications/solvers/incompressible/adjointShapeOptimizationFoam/Make/options patching file applications/solvers/incompressible/simpleFoam/SRFSimpleFoam/Make/options can't find file to patch at input line 57 Perhaps you used the wrong -p or --strip option? The text leading up to this was: -------------------------- |diff --git a/applications/solvers/lagrangian/DPMFoam/Make/options b/applications/solvers/lagrangian/DPMFoam/Make/options |--- a/applications/solvers/lagrangian/DPMFoam/Make/options |+++ b/applications/solvers/lagrangian/DPMFoam/Make/options -------------------------- File to patch: Skip this patch? [y] Skipping patch. 1 out of 1 hunk ignored patching file applications/solvers/lagrangian/icoUncoupledKinematicParcelFoam/Make/options patching file applications/solvers/lagrangian/icoUncoupledKinematicParcelFoam/icoUncoupledKinematicParcelDyMFoam/Make/options Reversed (or previously applied) patch detected! Assume -R? [n] and so on for other command line like that. Instead ThirdPart patch runs without problem. Then, if I go on the tutorial and I try to make ./Allwmake I have many errors. It seems I do not have a: /Users/ferra_marco/OpenFOAM/OpenFOAM-2.2.2/wmake/rules/darwinIntel64Gcc46/general: No such file or directory I enclose my log file. I hope someone can help me. Thanks Marco |
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October 10, 2017, 18:18 |
Installing openfoam 2.0 in macbook showing error
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#136 |
New Member
Maheandar
Join Date: Oct 2017
Posts: 11
Rep Power: 9 |
hai friends,
I would like to install openfoam 2.0 in mac. While installing i got the error that i mentioned below. Anyone can give the idea or link to solve the error is helpful for me. ./Allwmake: 4: ./Allwmake: wmakeCheckPwd: not found Error: Current directory is not $WM_PROJECT_DIR The environment variables are inconsistent with the installation. Check the OpenFOAM entries in your dot-files and source them. Thanks in advance. |
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October 10, 2017, 18:25 |
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#137 | |
Senior Member
Ruben Di Battista
Join Date: May 2013
Location: Paris
Posts: 137
Rep Power: 13 |
Quote:
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