[simone.rowing]

Have a look at /Users/simomartini/OpenFOAM/OpenFOAM-2.1.0/wmake/rules/darwinIntel64Gcc46 : it should be a symbolic link to the directory darwinIntel64Gcc in the same directory. The patch-program doesn't create this correctly. So if it is a plain file delete it (darwinIntel64Gcc46) and replace it with a symbolic link to the neighbour directory. Or copy the directory

I had the same problem but I solve mine with the help of Bernhard with this solution. Try this solution problably this is your problem.

[rdbisme]

Originally Posted by simone.rowing

I had the same problem but I solve mine with the help of Bernhard with this solution. Try this solution problably this is your problem.

Ok, thanks for your answer. I was doing symlinking wrong. I removed all the files and did:

cd wmake/rules
ln -s darwinIntel64Gcc/ darwinIntel64Gcc46

this seems to have worked.
Another question: Do i have to set

 export WM_MPLIB=SYSTEMOPENMPI

?

[rdbisme]

Done compiling, in the log i still have some errors:

gccmp-4.6 -m64 -fsignaling-nans  -ftrapping-math  -Wall -O2   -fPIC -Ddarwin dirToString.c -o /Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/wmake/platforms/darwinIntel64Gcc46/dirToString
make: gccmp-4.6: No such file or directory
make: *** [/Users/#########/OpenFOAM/OpenFOAM-2.2.x/wmake/platforms/darwinIntel64Gcc46/dirToString] Error 1

gccmp-4.6 -O3 -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -Drestrict=__restrict -DCOMMON_TIMING_OLD -DSCOTCH_VERSION=6 -DSCOTCH_RELEASE=0 -DSCOTCH_PATCHLEVEL=0 dummysizes.c -o dummysizes -lz -lm 
make[2]: gccmp-4.6: No such file or directory
make[2]: *** [dummysizes] Error 1
make[1]: *** [scotch] Error 2
make: *** [scotch] Error 2

gccmp-4.6 -O3 -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -Drestrict=__restrict -DCOMMON_TIMING_OLD -DSCOTCH_VERSION=6 -DSCOTCH_RELEASE=0 -DSCOTCH_PATCHLEVEL=0 ddummysizes.c -o dummysizes -lz -lm 
make[2]: gccmp-4.6: No such file or directory
make[2]: *** [dummysizes] Error 1
make[1]: *** [scotch] Error 2
make: *** [ptscotch] Error 2

scotchDecomp.C:132:20: fatal error: scotch.h: No such file or directory
compilation terminated.
make: *** [Make/darwinIntel64Gcc46DPOpt/scotchDecomp.o] Error 1

ptscotchDecomp.C:126:22: fatal error: ptscotch.h: No such file or directory
compilation terminated.
make: *** [Make/darwinIntel64Gcc46DPOptMACPORTOPENMPI/ptscotchDecomp.o] Error 1

$SOURCE -o Make/darwinIntel64Gcc46DPOpt/SloanRenumber.o
ld: library not found for -lboost_thread

SurfaceFeatureExtract.C:85:47: error: wrong number of template arguments (1, should be 3)
/opt/local/include/CGAL/Monge_via_jet_fitting.h:57:9: error: provided for 'template<class DataKernel, class LocalKernel, class SvdTraits> class CGAL::Monge_via_jet_fitting'
surfaceFeatureExtract.C:85:70: error: invalid type in declaration before ';' token
surfaceFeatureExtract.C:86:47: error: expected initializer before 'Monge_form'
surfaceFeatureExtract.C:148:9: error: 'Monge_form' was not declared in this scope
surfaceFeatureExtract.C:148:20: error: expected ';' before 'monge_form'
surfaceFeatureExtract.C:164:21: error: 'monge_form' was not declared in this scope
surfaceFeatureExtract.C:146:31: warning: unused variable 'monge_fit' [-Wunused-variable]
surfaceFeatureExtract.C:92:18: warning: unused variable 'd_monge' [-Wunused-variable]

It seems to have problem with scotch/ptscotch compiling. Someone can give me some directions to solve this?

[gschaider]

Originally Posted by tidusuper91

Done compiling, in the log i still have some errors:

gccmp-4.6 -m64 -fsignaling-nans  -ftrapping-math  -Wall -O2   -fPIC -Ddarwin dirToString.c -o /Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/wmake/platforms/darwinIntel64Gcc46/dirToString
make: gccmp-4.6: No such file or directory
make: *** [/Users/#########/OpenFOAM/OpenFOAM-2.2.x/wmake/platforms/darwinIntel64Gcc46/dirToString] Error 1

That is strange. It should be gcc-mp-4.6. I don't see how the minus go missing (WM_CC is set in etc/settings/profile.sh). Maybe you changed WM_CC somewhere else in an attempt to fix things

[rdbisme]

Originally Posted by gschaider

That is strange. It should be gcc-mp-4.6. I don't see how the minus go missing (WM_CC is set in etc/settings/profile.sh). Maybe you changed WM_CC somewhere else in an attempt to fix things

Ok right. I had mispelled gcc-mp-4.6 in the bashrc file. Now it's correct. Recompiled, still some errors:

cp: ../bin/d[agm]*: No such file or directory
make: [install] Error 1 (ignored)

ld: library not found for -lboost_thread
collect2: ld returned 1 exit status
make: *** [/Users/#####/OpenFOAM/OpenFOAM-2.2.x/platforms/darwinIntel64Gcc46DPOpt/lib/libSloanRenumber.dylib] Error 1

surfaceFeatureExtract.C:85:47: error: wrong number of template arguments (1, should be 3)
/opt/local/include/CGAL/Monge_via_jet_fitting.h:57:9: error: provided for 'template<class DataKernel, class LocalKernel, class SvdTraits> class CGAL::Monge_via_jet_fitting'
surfaceFeatureExtract.C:85:78: error: invalid type in declaration before ';' token
surfaceFeatureExtract.C:86:57: error: expected initializer before 'Monge_form'
surfaceFeatureExtract.C:148:9: error: 'Monge_form' was not declared in this scope
surfaceFeatureExtract.C:148:20: error: expected ';' before 'monge_form'
surfaceFeatureExtract.C:164:21: error: 'monge_form' was not declared in this scope
surfaceFeatureExtract.C:146:31: warning: unused variable 'monge_fit' [-Wunused-variable]
surfaceFeatureExtract.C:92:18: warning: unused variable 'd_monge' [-Wunused-variable]
make[2]: *** [Make/darwinIntel64Gcc46DPOpt/surfaceFeatureExtract.o] Error 1
make[2]: Target `/Users/######/OpenFOAM/OpenFOAM-2.2.x/platforms/darwinIntel64Gcc46DPOpt/bin/surfaceFeatureExtract' not remade because of errors.
make[1]: *** [surfaceFeatureExtract] Error 2

OpenFOAM/OpenFOAM-2.2.x/platforms/darwinIntel64Gcc46DPOpt/bin/surfaceTransformPoints
make[1]: Target `application' not remade because of errors.
make: *** [surface] Error 2

Sorry for my incapacity.

[gschaider]

Originally Posted by tidusuper91

Ok right. I had mispelled gcc-mp-4.6 in the bashrc file. Now it's correct. Recompiled, still some errors:

cp: ../bin/d[agm]*: No such file or directory
make: [install] Error 1 (ignored)

Where would that happen?

Originally Posted by tidusuper91

ld: library not found for -lboost_thread
collect2: ld returned 1 exit status
make: *** [/Users/#####/OpenFOAM/OpenFOAM-2.2.x/platforms/darwinIntel64Gcc46DPOpt/lib/libSloanRenumber.dylib] Error 1

With my patches if the variable WM_USE_MACPORT is set and the MacPort-verison of boost is installed then it should use the -lboost_thread-mt library.

Anyway: this library is not essential (99% of OF will work without it)

Originally Posted by tidusuper91

surfaceFeatureExtract.C:85:47: error: wrong number of template arguments (1, should be 3)
/opt/local/include/CGAL/Monge_via_jet_fitting.h:57:9: error: provided for 'template<class DataKernel, class LocalKernel, class SvdTraits> class CGAL::Monge_via_jet_fitting'
surfaceFeatureExtract.C:85:78: error: invalid type in declaration before ';' token
surfaceFeatureExtract.C:86:57: error: expected initializer before 'Monge_form'
surfaceFeatureExtract.C:148:9: error: 'Monge_form' was not declared in this scope
surfaceFeatureExtract.C:148:20: error: expected ';' before 'monge_form'
surfaceFeatureExtract.C:164:21: error: 'monge_form' was not declared in this scope
surfaceFeatureExtract.C:146:31: warning: unused variable 'monge_fit' [-Wunused-variable]
surfaceFeatureExtract.C:92:18: warning: unused variable 'd_monge' [-Wunused-variable]
make[2]: *** [Make/darwinIntel64Gcc46DPOpt/surfaceFeatureExtract.o] Error 1
make[2]: Target `/Users/######/OpenFOAM/OpenFOAM-2.2.x/platforms/darwinIntel64Gcc46DPOpt/bin/surfaceFeatureExtract' not remade because of errors.
make[1]: *** [surfaceFeatureExtract] Error 2

Compiler-call would be super-helpful in this case. Anyway: for first experiments in OF this utilitiy is not required.

Originally Posted by tidusuper91

OpenFOAM/OpenFOAM-2.2.x/platforms/darwinIntel64Gcc46DPOpt/bin/surfaceTransformPoints
make[1]: Target `application' not remade because of errors.
make: *** [surface] Error 2

Sorry for my incapacity.

The last error is just a followup to the others. But I'm not sure.

Anyway: you tried to run a basic tutorial (blockMesh, setFields, interFoam) and does that work?

[rdbisme]

Thanks for your very precious help. Anyway,
i run an incompressible tutorial and it seems to work.

This is for the not found directory. It seems to happen in the scotch directory in Thirdparty folder

cd libscotchmetis ; make                                                                scotch && make install)
make CC="gcc-mp-4.6" SCOTCHLIB=ptscotch                        \
                    libscotchmetis.dylib
gcc-mp-4.6 -O3 -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -Drestrict=__restrict -DCOMMON_TIMING_OLD -fPIC -I../../include -I../libscotch -c metis_graph_order.c -o metis_graph_order.o
gcc-mp-4.6 -O3 -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -Drestrict=__restrict -DCOMMON_TIMING_OLD -fPIC -I../../include -I../libscotch -c metis_graph_order_f.c -o metis_graph_order_f.o
gcc-mp-4.6 -O3 -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -Drestrict=__restrict -DCOMMON_TIMING_OLD -fPIC -I../../include -I../libscotch -c metis_graph_part.c -o metis_graph_part.o
gcc-mp-4.6 -O3 -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -Drestrict=__restrict -DCOMMON_TIMING_OLD -fPIC -I../../include -I../libscotch -c metis_graph_part_f.c -o metis_graph_part_f.o
gcc-mp-4.6 -dynamiclib -undefined dynamic_lookup -o libscotchmetis.dylib metis_graph_order.o metis_graph_order_f.o metis_graph_part.o metis_graph_part_f.o
echo libscotchmetis.dylib
libscotchmetis.dylib
make CC="gcc-mp-4.6" SCOTCHLIB=ptscotch                        \
                    libscotchmetis.dylib
make[2]: `libscotchmetis.dylib' is up to date.
cp metis.h ../../include
cp libscotchmetis.dylib ../../lib
+ make prefix=/Users/rubendibattista/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46/scotch_6.0.0 libdir=/Users/rubendibattista/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46DPOpt/lib install
mkdir /Users/rubendibattista/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46/scotch_6.0.0/bin
mkdir /Users/rubendibattista/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46/scotch_6.0.0/include
mkdir /Users/rubendibattista/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46/scotch_6.0.0/share
mkdir /Users/rubendibattista/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46/scotch_6.0.0/share/man
mkdir /Users/rubendibattista/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46/scotch_6.0.0/share/man/man1
cp -f ../bin/[agm]* /Users/rubendibattista/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46/scotch_6.0.0/bin
cp -f ../bin/d[agm]* /Users/rubendibattista/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46/scotch_6.0.0/bin
cp: ../bin/d[agm]*: No such file or directory

This for the surfaceFeatureConvert.C

Making dependency list for source file surfaceFeatureConvert.C
SOURCE=surfaceFeatureConvert.C ;  g++-mp-4.6 -m64 -fsignaling-nans  -ftrapping-math -DdarwinIntel64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O2  -DNoRepository -ftemplate-depth-100 -I/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/src/meshTools/lnInclude -I/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/src/edgeMesh/lnInclude -IlnInclude -I. -I/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/src/OpenFOAM/lnInclude -I/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/src/OSspecific/POSIX/lnInclude   -fPIC -Ddarwin -c $SOURCE -o Make/darwinIntel64Gcc46DPOpt/surfaceFeatureConvert.o
g++-mp-4.6 -m64 -fsignaling-nans  -ftrapping-math -DdarwinIntel64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O2  -DNoRepository -ftemplate-depth-100 -I/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/src/meshTools/lnInclude -I/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/src/edgeMesh/lnInclude -IlnInclude -I. -I/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/src/OpenFOAM/lnInclude -I/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/src/OSspecific/POSIX/lnInclude   -fPIC -Ddarwin -lpthread -L/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/platforms/darwinIntel64Gcc46DPOpt/lib/openmpi-macport -lPstream Make/darwinIntel64Gcc46DPOpt/surfaceFeatureConvert.o -L/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/platforms/darwinIntel64Gcc46DPOpt/lib \
         -lmeshTools -ledgeMesh -lOpenFOAM -ldl   -lpthread -lm -o /Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/platforms/darwinIntel64Gcc46DPOpt/bin/surfaceFeatureConvert
+ '[' -n /opt/local ']'
+ echo

+ echo 'Compiling surfaceFeatureExtract with CGAL curvature support'
Compiling surfaceFeatureExtract with CGAL curvature support
+ echo

+ '[' -n 1 ']'
+ THREAD_EXTENSION=-mt
+ wmake 'ENABLE_CURVATURE=-DENABLE_CURVATURE            EXE_FROUNDING_MATH=-frounding-math            USE_F2C=-DCGAL_USE_F2C            CGAL_LIBDIR=-L/opt/local/lib            LAPACK_LIB=-llapack            BLAS_LIB=-lblas            CGAL_LIB=-lCGAL            CGAL_BOOST_LIB=-lboost_thread-mt            CGAL_MPFR_LIB=-lmpfr'
Making dependency list for source file surfaceFeatureExtract.C
SOURCE=surfaceFeatureExtract.C ;  g++-mp-4.6 -m64 -fsignaling-nans  -ftrapping-math -DdarwinIntel64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O2  -DNoRepository -ftemplate-depth-100 -DENABLE_CURVATURE -frounding-math -DCGAL_USE_F2C -Wno-old-style-cast -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -ICGALPolyhedron -I/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/src/finiteVolume/lnInclude -I/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/src/meshTools/lnInclude -I/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/src/edgeMesh/lnInclude -I/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/src/triSurface/lnInclude -I/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/src/surfMesh/lnInclude -I/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/src/sampling/lnInclude -IlnInclude -I. -I/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/src/OpenFOAM/lnInclude -I/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/src/OSspecific/POSIX/lnInclude   -fPIC -Ddarwin -c $SOURCE -o Make/darwinIntel64Gcc46DPOpt/surfaceFeatureExtract.o
surfaceFeatureExtract.C: In function 'Foam::scalarField calcCurvature(const Foam::triSurface&)':
surfaceFeatureExtract.C:85:47: error: wrong number of template arguments (1, should be 3)
/opt/local/include/CGAL/Monge_via_jet_fitting.h:57:9: error: provided for 'template<class DataKernel, class LocalKernel, class SvdTraits> class CGAL::Monge_via_jet_fitting'
surfaceFeatureExtract.C:85:78: error: invalid type in declaration before ';' token
surfaceFeatureExtract.C:86:57: error: expected initializer before 'Monge_form'
surfaceFeatureExtract.C:148:9: error: 'Monge_form' was not declared in this scope
surfaceFeatureExtract.C:148:20: error: expected ';' before 'monge_form'
surfaceFeatureExtract.C:164:21: error: 'monge_form' was not declared in this scope
surfaceFeatureExtract.C:146:31: warning: unused variable 'monge_fit' [-Wunused-variable]
surfaceFeatureExtract.C:92:18: warning: unused variable 'd_monge' [-Wunused-variable]
make[2]: *** [Make/darwinIntel64Gcc46DPOpt/surfaceFeatureExtract.o] Error 1
make[2]: Target `/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/platforms/darwinIntel64Gcc46DPOpt/bin/surfaceFeatureExtract' not remade because of errors.
make[1]: *** [surfaceFeatureExtract] Error 2

WM_USE_MACPORTS is set to 1.

PS: In the previus post you would be able to download my log file, if you needed it.

[gschaider]

Originally Posted by tidusuper91

Thanks for your very precious help. Anyway,
i run an incompressible tutorial and it seems to work.

This is for the not found directory. It seems to happen in the scotch directory in Thirdparty folder

cd libscotchmetis ; make                                                                scotch && make install)
make CC="gcc-mp-4.6" SCOTCHLIB=ptscotch                        \
                    libscotchmetis.dylib
gcc-mp-4.6 -O3 -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -Drestrict=__restrict -DCOMMON_TIMING_OLD -fPIC -I../../include -I../libscotch -c metis_graph_order.c -o metis_graph_order.o
gcc-mp-4.6 -O3 -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -Drestrict=__restrict -DCOMMON_TIMING_OLD -fPIC -I../../include -I../libscotch -c metis_graph_order_f.c -o metis_graph_order_f.o
gcc-mp-4.6 -O3 -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -Drestrict=__restrict -DCOMMON_TIMING_OLD -fPIC -I../../include -I../libscotch -c metis_graph_part.c -o metis_graph_part.o
gcc-mp-4.6 -O3 -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -Drestrict=__restrict -DCOMMON_TIMING_OLD -fPIC -I../../include -I../libscotch -c metis_graph_part_f.c -o metis_graph_part_f.o
gcc-mp-4.6 -dynamiclib -undefined dynamic_lookup -o libscotchmetis.dylib metis_graph_order.o metis_graph_order_f.o metis_graph_part.o metis_graph_part_f.o
echo libscotchmetis.dylib
libscotchmetis.dylib
make CC="gcc-mp-4.6" SCOTCHLIB=ptscotch                        \
                    libscotchmetis.dylib
make[2]: `libscotchmetis.dylib' is up to date.
cp metis.h ../../include
cp libscotchmetis.dylib ../../lib
+ make prefix=/Users/rubendibattista/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46/scotch_6.0.0 libdir=/Users/rubendibattista/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46DPOpt/lib install
mkdir /Users/rubendibattista/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46/scotch_6.0.0/bin
mkdir /Users/rubendibattista/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46/scotch_6.0.0/include
mkdir /Users/rubendibattista/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46/scotch_6.0.0/share
mkdir /Users/rubendibattista/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46/scotch_6.0.0/share/man
mkdir /Users/rubendibattista/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46/scotch_6.0.0/share/man/man1
cp -f ../bin/[agm]* /Users/rubendibattista/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46/scotch_6.0.0/bin
cp -f ../bin/d[agm]* /Users/rubendibattista/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46/scotch_6.0.0/bin
cp: ../bin/d[agm]*: No such file or directory

Hm. But the libraries get correctly created. So I wouldn't put too much thought into it

Originally Posted by tidusuper91

This for the surfaceFeatureConvert.C

Making dependency list for source file surfaceFeatureConvert.C
SOURCE=surfaceFeatureConvert.C ;  g++-mp-4.6 -m64 -fsignaling-nans  -ftrapping-math -DdarwinIntel64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O2  -DNoRepository -ftemplate-depth-100 -I/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/src/meshTools/lnInclude -I/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/src/edgeMesh/lnInclude -IlnInclude -I. -I/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/src/OpenFOAM/lnInclude -I/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/src/OSspecific/POSIX/lnInclude   -fPIC -Ddarwin -c $SOURCE -o Make/darwinIntel64Gcc46DPOpt/surfaceFeatureConvert.o
g++-mp-4.6 -m64 -fsignaling-nans  -ftrapping-math -DdarwinIntel64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O2  -DNoRepository -ftemplate-depth-100 -I/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/src/meshTools/lnInclude -I/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/src/edgeMesh/lnInclude -IlnInclude -I. -I/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/src/OpenFOAM/lnInclude -I/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/src/OSspecific/POSIX/lnInclude   -fPIC -Ddarwin -lpthread -L/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/platforms/darwinIntel64Gcc46DPOpt/lib/openmpi-macport -lPstream Make/darwinIntel64Gcc46DPOpt/surfaceFeatureConvert.o -L/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/platforms/darwinIntel64Gcc46DPOpt/lib \
         -lmeshTools -ledgeMesh -lOpenFOAM -ldl   -lpthread -lm -o /Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/platforms/darwinIntel64Gcc46DPOpt/bin/surfaceFeatureConvert
+ '[' -n /opt/local ']'
+ echo

+ echo 'Compiling surfaceFeatureExtract with CGAL curvature support'
Compiling surfaceFeatureExtract with CGAL curvature support
+ echo

+ '[' -n 1 ']'
+ THREAD_EXTENSION=-mt
+ wmake 'ENABLE_CURVATURE=-DENABLE_CURVATURE            EXE_FROUNDING_MATH=-frounding-math            USE_F2C=-DCGAL_USE_F2C            CGAL_LIBDIR=-L/opt/local/lib            LAPACK_LIB=-llapack            BLAS_LIB=-lblas            CGAL_LIB=-lCGAL            CGAL_BOOST_LIB=-lboost_thread-mt            CGAL_MPFR_LIB=-lmpfr'
Making dependency list for source file surfaceFeatureExtract.C
SOURCE=surfaceFeatureExtract.C ;  g++-mp-4.6 -m64 -fsignaling-nans  -ftrapping-math -DdarwinIntel64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O2  -DNoRepository -ftemplate-depth-100 -DENABLE_CURVATURE -frounding-math -DCGAL_USE_F2C -Wno-old-style-cast -I/opt/local/include -I/opt/local/include -I/opt/local/include -I/opt/local/include -ICGALPolyhedron -I/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/src/finiteVolume/lnInclude -I/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/src/meshTools/lnInclude -I/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/src/edgeMesh/lnInclude -I/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/src/triSurface/lnInclude -I/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/src/surfMesh/lnInclude -I/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/src/sampling/lnInclude -IlnInclude -I. -I/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/src/OpenFOAM/lnInclude -I/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/src/OSspecific/POSIX/lnInclude   -fPIC -Ddarwin -c $SOURCE -o Make/darwinIntel64Gcc46DPOpt/surfaceFeatureExtract.o
surfaceFeatureExtract.C: In function 'Foam::scalarField calcCurvature(const Foam::triSurface&)':
surfaceFeatureExtract.C:85:47: error: wrong number of template arguments (1, should be 3)
/opt/local/include/CGAL/Monge_via_jet_fitting.h:57:9: error: provided for 'template<class DataKernel, class LocalKernel, class SvdTraits> class CGAL::Monge_via_jet_fitting'
surfaceFeatureExtract.C:85:78: error: invalid type in declaration before ';' token
surfaceFeatureExtract.C:86:57: error: expected initializer before 'Monge_form'
surfaceFeatureExtract.C:148:9: error: 'Monge_form' was not declared in this scope
surfaceFeatureExtract.C:148:20: error: expected ';' before 'monge_form'
surfaceFeatureExtract.C:164:21: error: 'monge_form' was not declared in this scope
surfaceFeatureExtract.C:146:31: warning: unused variable 'monge_fit' [-Wunused-variable]
surfaceFeatureExtract.C:92:18: warning: unused variable 'd_monge' [-Wunused-variable]
make[2]: *** [Make/darwinIntel64Gcc46DPOpt/surfaceFeatureExtract.o] Error 1
make[2]: Target `/Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/platforms/darwinIntel64Gcc46DPOpt/bin/surfaceFeatureExtract' not remade because of errors.
make[1]: *** [surfaceFeatureExtract] Error 2

WM_USE_MACPORTS is set to 1.

PS: In the previus post you would be able to download my log file, if you needed it.

This seems to be a problem with the most recent version 4.2 of CGAL (OpenFOAM uses 4.0). I solved it by downgrading to version 4.1 (MacPort allows you to do that).

[rdbisme]

Sorry for my late response but i was busy with an exam

Anyway, i downgraded cgal and used openmpi from system and i have just two errors:

cp -f ../bin/[agm]* /Users/######/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46/scotch_6.0.0/bin
cp: ../bin/[agm]*: No such file or directory

darwinIntel64Gcc46DPOpt/SloanRenumber.o
ld: library not found for -lboost_thread
collect2: ld returned 1 exit status
make: *** [/Users/######/OpenFOAM/OpenFOAM-2.2.x/platforms/darwinIntel64Gcc46DPOpt/lib/libSloanRenumber.dylib] Error 1

Boost is installed:

The following ports are currently installed:
  boost @1.53.0_1+no_single+no_static+python27 (active)

What could you tell me about especially the last error?

[rdbisme]

EDIT (19:32 29/05/13):

I tried to run the motorbike tutorial

./Allrun
Running surfaceFeatureExtract on /Users/rubendibattista/OpenFOAM/rubendibattista-2.2.x/run/motorbike
Running blockMesh on /Users/rubendibattista/OpenFOAM/rubendibattista-2.2.x/run/motorbike
Running decomposePar on /Users/rubendibattista/OpenFOAM/rubendibattista-2.2.x/run/motorbike
Running snappyHexMesh in parallel on /Users/rubendibattista/OpenFOAM/rubendibattista-2.2.x/run/motorbike using 6 processes
Running patchSummary in parallel on /Users/rubendibattista/OpenFOAM/rubendibattista-2.2.x/run/motorbike using 6 processes
Running potentialFoam in parallel on /Users/rubendibattista/OpenFOAM/rubendibattista-2.2.x/run/motorbike using 6 processes
Running simpleFoam in parallel on /Users/rubendibattista/OpenFOAM/rubendibattista-2.2.x/run/motorbike using 6 processes
Running reconstructParMesh on /Users/rubendibattista/OpenFOAM/rubendibattista-2.2.x/run/motorbike
Running reconstructPar on /Users/rubendibattista/OpenFOAM/rubendibattista-2.2.x/run/motorbike

And opening the SnappyHexMesh log

sudo nano log.snappyHexMesh

I get:

Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/bin/tools/RunFunctions: line 75: mpirun: command not found

In fact if i do in a terminal:

mpirun -V

it can't find the command.

If I, differently, do:

openmpirun -V

I get:

openmpirun (OpenRTE) 1.7.1

Report bugs to http://www.open-mpi.org/community/help/

so i managed to edit the ~/.alias file including

alias mpirun='openmpirun'

it works in the terminal but Runfunctions still can't get it.

(Same things appear to happen with paraview. I created an alias in ~/.alias file. It works from outside the OpenFoam image but if i do

paraFoam

/Users/#####/OpenFOAM/OpenFOAM-2.2.x/bin/paraFoam: line 267: paraview: command not found

it's like it can't recognize aliases inside OpenFoam directory).

[gschaider]

Originally Posted by tidusuper91

EDIT (19:32 29/05/13):

I tried to run the motorbike tutorial

./Allrun
Running surfaceFeatureExtract on /Users/rubendibattista/OpenFOAM/rubendibattista-2.2.x/run/motorbike
Running blockMesh on /Users/rubendibattista/OpenFOAM/rubendibattista-2.2.x/run/motorbike
Running decomposePar on /Users/rubendibattista/OpenFOAM/rubendibattista-2.2.x/run/motorbike
Running snappyHexMesh in parallel on /Users/rubendibattista/OpenFOAM/rubendibattista-2.2.x/run/motorbike using 6 processes
Running patchSummary in parallel on /Users/rubendibattista/OpenFOAM/rubendibattista-2.2.x/run/motorbike using 6 processes
Running potentialFoam in parallel on /Users/rubendibattista/OpenFOAM/rubendibattista-2.2.x/run/motorbike using 6 processes
Running simpleFoam in parallel on /Users/rubendibattista/OpenFOAM/rubendibattista-2.2.x/run/motorbike using 6 processes
Running reconstructParMesh on /Users/rubendibattista/OpenFOAM/rubendibattista-2.2.x/run/motorbike
Running reconstructPar on /Users/rubendibattista/OpenFOAM/rubendibattista-2.2.x/run/motorbike

And opening the SnappyHexMesh log

sudo nano log.snappyHexMesh

I get:

Users/rubendibattista/OpenFOAM/OpenFOAM-2.2.x/bin/tools/RunFunctions: line 75: mpirun: command not found

In fact if i do in a terminal:

mpirun -V

it can't find the command.

If I, differently, do:

openmpirun -V

I get:

openmpirun (OpenRTE) 1.7.1

Report bugs to http://www.open-mpi.org/community/help/

so i managed to edit the ~/.alias file including

alias mpirun='openmpirun'

it works in the terminal but Runfunctions still can't get it.

(Same things appear to happen with paraview. I created an alias in ~/.alias file. It works from outside the OpenFoam image but if i do

paraFoam

/Users/#####/OpenFOAM/OpenFOAM-2.2.x/bin/paraFoam: line 267: paraview: command not found

it's like it can't recognize aliases inside OpenFoam directory).

Welcome to the wonderful world of shell-initializations.

mpirun vs openmpirun: I wouldn't consider that a bug of the Mac-patch but an inflexibility of the RunFunctions. If you really have to run those scripts create a symbolic link somewhere in the PATH named mpirun pointing to openmpirun

paraFoam: I don't know which paraview you're using. I use the Kitware binaries. If my patches find that at /Applications/paraview.app they modify the path correctly. If not you're on your own.
Also do I not support the paraFoam reader but I use the reader built into paraview. Not because the paraFoam reader is bad but because I don't want to spend my time compiling paraview

[gschaider]

Originally Posted by tidusuper91

Sorry for my late response but i was busy with an exam

Anyway, i downgraded cgal and used openmpi from system and i have just two errors:

cp -f ../bin/[agm]* /Users/######/OpenFOAM/ThirdParty-2.2.x/platforms/darwinIntel64Gcc46/scotch_6.0.0/bin
cp: ../bin/[agm]*: No such file or directory

darwinIntel64Gcc46DPOpt/SloanRenumber.o
ld: library not found for -lboost_thread
collect2: ld returned 1 exit status
make: *** [/Users/######/OpenFOAM/OpenFOAM-2.2.x/platforms/darwinIntel64Gcc46DPOpt/lib/libSloanRenumber.dylib] Error 1

Boost is installed:

The following ports are currently installed:
  boost @1.53.0_1+no_single+no_static+python27 (active)

What could you tell me about especially the last error?

In OF the library is called boost_thread-mt (no idea why). Check in $FOAM_SRC/renumber/Allwmake if you have something like

if [ -n "$BOOST_ARCH_PATH" ]
then
    if [ -n "$WM_USE_MACPORT" ]
    then
        export BOOST_THREAD_EXTENSION=-mt
    fi

    wmake $makeType SloanRenumber
else
    echo
    echo "Skipping SloanRenumber"
    echo
fi

there. Especially the WM_USE_MACPORT-part. Anyway. I wouldn't spend too much time on this library. It is not something you use every day. Unless you use the renumberMesh-utiltiy on a regular basis

[lithos]

Dear all,

thanks to Bernhard for the patches for the new recent version. In fact I spent the last half year with OpenFOAM-ext, so I did not need the other branch.
However, today I tried to compile OpenFOAM 2.2.0 source on a MacBook Pro with OS X 10.8.4. I could confirm some traps I ran into as well:

There is some sort of cp in Paraview.app, so I just deleted it, problem solved. If not this will prevent Scotch from compiling. Marked already here:
http://www.cfd-online.com/Forums/ope...tml#post416872

Concerning surfaceFeatureExtract I would be glad if somebody could tell me where to find cgal 4.1. I tried with port to localise it, but it seems that only 4.2 is in the repository. Problem stated here:
http://www.cfd-online.com/Forums/ope...tml#post429164

Then I also had to use an alias for mpirun as stated here: http://www.cfd-online.com/Forums/ope...tml#post430798

Last but not least I followed http://www.cfd-online.com/Forums/ope...tml#post430868 and exchanged line 21 to 28 in $FOAM_SRC/renumber/Allwmake

if [ -n "$BOOST_ARCH_PATH" ]
then
    wmake $makeType SloanRenumber
else
    echo
    echo "Skipping SloanRenumber"
    echo
fi

by

if [ -n "$BOOST_ARCH_PATH" ]
then
    if [ -n "$WM_USE_MACPORT" ]
    then
        export BOOST_THREAD_EXTENSION=-mt
    fi

    wmake $makeType SloanRenumber
else
    echo
    echo "Skipping SloanRenumber"
    echo
fi

but I still got

+ export BOOST_THREAD_EXTENSION=-mt
+ BOOST_THREAD_EXTENSION=-mt
+ wmake libso SloanRenumber
ld: library not found for -lboost_thread
collect2: ld returned 1 exit status
make: ***  [/Users/mplagge/OpenFOAM/OpenFOAM-2.2.0/platforms/darwinIntel64Gcc46DPOpt/lib/libSloanRenumber.dylib]  Error 1

So in the end I added manually -mt in $FOAM_SRC/renumber/SloanRenumber/Make/options in line 9

    -L$(BOOST_ARCH_PATH)/lib -lboost_thread-mt \

Then it worked just fine:

+ export BOOST_THREAD_EXTENSION=-mt
+ BOOST_THREAD_EXTENSION=-mt
+ wmake libso SloanRenumber
wmakeLnInclude: linking include files to ./lnInclude
SOURCE=SloanRenumber.C ; ccache g++-mp-4.6 -m64 -fsignaling-nans   -ftrapping-math -DdarwinIntel64 -DWM_DP -Wall -Wextra  -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O2   -DNoRepository -ftemplate-depth-100 -I/opt/local/include  -I/Users/mplagge/OpenFOAM/OpenFOAM-2.2.0/src/meshTools/lnInclude  -I/Users/mplagge/OpenFOAM/OpenFOAM-2.2.0/src/parallel/decompose/decompositionMethods/lnInclude   -I/Users/mplagge/OpenFOAM/OpenFOAM-2.2.0/src/renumber/renumberMethods/lnInclude  -IlnInclude -I.  -I/Users/mplagge/OpenFOAM/OpenFOAM-2.2.0/src/OpenFOAM/lnInclude  -I/Users/mplagge/OpenFOAM/OpenFOAM-2.2.0/src/OSspecific/POSIX/lnInclude    -fPIC -Ddarwin -c $SOURCE -o  Make/darwinIntel64Gcc46DPOpt/SloanRenumber.o
'/Users/mplagge/OpenFOAM/OpenFOAM-2.2.0/platforms/darwinIntel64Gcc46DPOpt/lib/libSloanRenumber.dylib'  is up to date.

So if anybody of you could let me know about the cgal 4.1 issue I would appreciate it. If I can spare some time I will set up a new manual and maybe we could write some sort of prerequisite check for Mac. Even if it is not that important I would rather have a fully working image. Just in case I ever need it later.

Have a nice day.

Cheers,

Michael

[gschaider]

Originally Posted by lithos

anybody of you could let me know about the cgal 4.1 issue I would appreciate it. If I can spare some time I will set up a new manual and maybe we could write some sort of prerequisite check for Mac. Even if it is not that important I would rather have a fully working image. Just in case I ever need it later.

I think I made it compile with 4.2 with the attached patch. Wanted to report it to the upstream but I first wanted to verify whether this is a fix to a MacOnly-problem

Bernhard

SurfaceCGALFix.patch

[lithos]

Originally Posted by gschaider

I think I made it compile with 4.2 with the attached patch. Wanted to report it to the upstream but I first wanted to verify whether this is a fix to a MacOnly-problem

Bernhard

Dear Bernhard,

thanks a lot for the patch. It worked perfectly.

Cheers,

Michael

[karlvirgil]

My OpenFOAM-2.2.x installation goes fine except for one item. The Allwmake script for third party complains about a missing ../../etc/wmakeFiles/scotch/Makefile.inc.i686_mac_darwin.shlib-OpenFOAM
file. This file doesn't exist.

Any thoughts?

[gschaider]

Originally Posted by karlvirgil

My OpenFOAM-2.2.x installation goes fine except for one item. The Allwmake script for third party complains about a missing ../../etc/wmakeFiles/scotch/Makefile.inc.i686_mac_darwin.shlib-OpenFOAM
file. This file doesn't exist.

Any thoughts?

It seems to be missing in the first version of the ThirdParty-patch I uploaded but is in the second one

[dav.dap83]

Hi,

I tried to compile the 2.2.1 version. I followed the instructions posted above, but it seems that the compiler does not find the source files:

could not open file <path of every source file>

and then the compilation stops after a while. The files are of course present in the path above.


Any ideas?
Thank you

[gschaider]

Originally Posted by dav.dap83

Hi,

I tried to compile the 2.2.1 version. I followed the instructions posted above, but it seems that the compiler does not find the source files:

could not open file <path of every source file>

and then the compilation stops after a while. The files are of course present in the path above.


Any ideas?
Thank you

No idea. Have you sourced etc/bashrc before the compilation?

[dav.dap83]

Originally Posted by gschaider

No idea. Have you sourced etc/bashrc before the compilation?

Yes, I have.

Perhaps it may be more helpful to upload the log file.