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[waves2Foam] waves2Foam on an Ubuntu 18.04 with OpenFOAM 1712

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Old   October 13, 2020, 16:31
Default waves2FOAM Ubuntu 20.04 and OP2006
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Luiz Ferreira
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Good evening.

I have compiled OP2006 and waves2FOAm but when I try to run the tutorial wave/Foam/waveFlume appers this error. Can anyone help me?

root@25dde8998396:/opt/OpenFOAM/ThirdParty-v2006/waves2Foam/tutorials/waveFoam/waveFlume# ./Allrun
v2006
Running blockMesh on /opt/OpenFOAM/ThirdParty-v2006/waves2Foam/tutorials/waveFoam/waveFlume
Running waveGaugesNProbes on /opt/OpenFOAM/ThirdParty-v2006/waves2Foam/tutorials/waveFoam/waveFlume
Running setWaveParameters on /opt/OpenFOAM/ThirdParty-v2006/waves2Foam/tutorials/waveFoam/waveFlume
/opt/OpenFOAM/OpenFOAM-v2006/bin/tools/RunFunctions: line 208: 5241 Aborted $appRun $appArgs "$@" > $logFile 2>&1
Running setWaveField on /opt/OpenFOAM/ThirdParty-v2006/waves2Foam/tutorials/waveFoam/waveFlume
Running waveFoam on /opt/OpenFOAM/ThirdParty-v2006/waves2Foam/tutorials/waveFoam/waveFlume
Running postProcessWaves2Foam on /opt/OpenFOAM/ThirdParty-v2006/waves2Foam/tutorials/waveFoam/waveFlume
/opt/OpenFOAM/OpenFOAM-v2006/bin/tools/RunFunctions: line 208: 5269 Segmentation fault $appRun $appArgs "$@" > $logFile 2>&1
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Old   October 20, 2020, 13:46
Default Issue compiling waves2Foam on Ubuntu (Windows 10 WSL)
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Benjamin Norris
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Hello everyone,

Has anyone had luck compiling waves2Foam on Windows Subsystem for Linux? I have attempted to compile waves2Foam using different versions of OpenFOAM (v2006, v1912, v1812, and v1712) without much luck so far. After reading through many forum posts, I realize that waves2Foam is not fully compliable for newer versions of OF, so I intend to use a stable version with v1812 or v1712, whichever works.

I have made sure that all the third-party dependencies are installed and are working (git, gfortran, svn, and gsl), which I installed using apt-get install, e.g.,

sudo apt-get install git ;

sudo apt-get install gfortran ;

sudo apt-get install subversion ; and

sudo apt-get install libgsl-dev

My waves2Foam install folder is located at ~/OpenFOAM/<user>-v<version>/OpenFoam/applications/utilities/waves2Foam as indicated in the instruction manual, where <user> is my username and <version> is 1712, 1812, 1912, etc.

and my OpenFOAM installation is located at
/opt/OpenFOAM/

When I attempt to compile waves2Foam by entering ~/OpenFOAM/<user>-v<version>/OpenFoam/applications/utilities/waves2Foam and then running ./Allwmake , Ubuntu runs through the compilation to completion. However, in all cases, I get error messages like :

-limmiscibleIncompressibleTwoPhaseMixture -lturbulenceModels -lincompressibleTurbulenceModels -lfiniteVolume -lfvOptions -lmeshTools -lsampling -L/home/bknorris/OpenFOAM/bknorris-v1712/platforms/linux64Gcc63DPInt32Opt/lib -lwaves2Foam -lwaves2FoamPorosity -lwaves2FoamSampling -L/usr/lib64 -lgsl -lgslcblas -lOpenFOAM -ldl \
-lm -o /home/bknorris/OpenFOAM/bknorris-v1712/platforms/linux64Gcc63DPInt32Opt/bin/porousWaveFoam
/usr/bin/ld: cannot find -lwaves2Foam
/usr/bin/ld: cannot find -lwaves2FoamSampling


If I try to run say the waveFlume tutorial, I get the following error in one of the log files generated by ./Allrun,

/opt/OpenFOAM/OpenFOAM-v1712/bin/tools/RunFunctions: line 146: setWaveParameters: command not found

Can anyone help? I'm thinking that maybe waves2Foam is just incompatible with Ubuntu on Windows? I have attached my second run of ./Allwmake if it is of use.

Thank you!

Ben
Attached Files
File Type: txt Allwmake.txt (24.6 KB, 17 views)
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Old   October 20, 2020, 14:15
Default waves2FOAM WSL
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Luiz Ferreira
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Ubuntu and v1912.

Step by Step:

sudo apt-get update && sudo apt-get upgrade
sudo apt-get install gcc g++ gfortran gsl-bin make
sudo apt-get install m4 bison flex subversion ptscotch cmake
sudo apt-get install mpi-default-dev wget
sudo apt-get install libz-dev libgsl-dev vim nano git

cd $WM_PROJECT_DIR/etc
nano bashrc

Select the system compiler ->Go to the line where is written WM_COMPILER TYPE
export WM_COMPILER_TYPE=system
source $HOME/.basrhrc

Compile waves2FOAM. If you have some problem at Ocean3D-Fortran go to the folder thirdparty and compile the VTK.

Last edited by lppferreira; October 20, 2020 at 14:18. Reason: OpenFOAM version
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Old   October 20, 2020, 15:36
Default waves2Foam running on Ubuntu (Windows 10) v1912
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Benjamin Norris
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Quote:
Originally Posted by lppferreira View Post

Step by Step:
Luiz,

My utmost thanks for your speedy reply and for providing me the solution to get waves2Foam up and running.

Happy Foam-ing,



Ben
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Old   December 17, 2020, 20:05
Default OF+v2006 and waves2Foam on Ubuntu 18.04.5
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Vahid
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Quote:
Originally Posted by lppferreira View Post
Ubuntu and v1912.

Step by Step:

sudo apt-get update && sudo apt-get upgrade
sudo apt-get install gcc g++ gfortran gsl-bin make
sudo apt-get install m4 bison flex subversion ptscotch cmake
sudo apt-get install mpi-default-dev wget
sudo apt-get install libz-dev libgsl-dev vim nano git

cd $WM_PROJECT_DIR/etc
nano bashrc

Select the system compiler ->Go to the line where is written WM_COMPILER TYPE
export WM_COMPILER_TYPE=system
source $HOME/.basrhrc

Compile waves2FOAM. If you have some problem at Ocean3D-Fortran go to the folder thirdparty and compile the VTK.

Dear Luiz
Hi,

Can you explain more how to select system compiler? I cant find it in nano bashrc page

It is for some days that I am trying to install waves2Foam on Ubuntu 18.04. No success

I have tried OpenFoam3.0.1 but failed.

Now I have installed openFoam v2006 from source code in HOME folder (I was going to install 1712, but it is no longer available on https://www.openfoam.com/ ).

I have done all steps I see in this thread but still no success.
I have attached the log file when making waves2FOAM on OFv2006:
Waves2FOAM.zip

I really appreciate if anyone could help.

Best Regards,
Vahid
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Old   December 18, 2020, 12:49
Default
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Benjamin Norris
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Hi Vahid,

I have put together some instructions for installing waves2foam on Ubuntu (WSL). Please note that these installation instructions are for OF v1912, I do not know if they will work for other versions of OF.

Also, you might try un-installing any third party dependencies ("sudo apt-get remove..."), including other OF installations, before trying a 'clean' install of waves2foam.

Code:
# How to install waves2Foam on Ubuntu (Windows 10)

Install OF v1912:
1. Download .tgz from here: https://www.openfoam.com/download/release-history.php to c:\Users\<USER>\Downloads
2. In Ubuntu, run command: cp -ar /mnt/c/Users/<USER>/Downloads/OpenFOAM-v1912-windows10.tgz .
3. run command: sudo tar -xvzf  OpenFOAM-v1912-windows10.tgz -C /opt/
4. run command: sudo chown -R $USER /opt/OpenFOAM
5. run command: echo "source /opt/OpenFOAM/OpenFOAM-v1912/etc/bashrc" >> ~/.bashrc
6. run command: source $HOME/.bashrc
7. OpenFOAM should work (hint: type 'whereis icoFoam'. If bash returns '/opt/OpenFOAM/OpenFOAM-v1912/platforms/linux64Gcc63DPInt32Opt/bin/icoFoam' then it is working)

Install third-party dependencies:
1. run command: sudo apt-get update && sudo apt-get upgrade
2. run command: sudo apt-get install gcc g++ gfortran gsl-bin make
3. run command: sudo apt-get install m4 bison flex subversion ptscotch cmake
4. run command: sudo apt-get install mpi-default-dev wget
5. run command: sudo apt-get install libz-dev libgsl-dev vim nano git
6. run command: cd $WM_PROJECT_DIR/etc
7. edit bashrc: nano bashrc
	7a. Select the system compiler -> Go to the line where is written WM_COMPILER TYPE and change 'ThirdParty' to 'system'
			# [WM_COMPILER_TYPE] - Compiler location:
			# = system | ThirdParty
				WM_COMPILER_TYPE system
	7b. save bashrc and exit nano
	7c. run command: source $HOME/.bashrc

Compile waves2Foam:
1. run command: cd ~/
2. run command: mkdir $HOME/../applications/utilities
3. run command: cd $HOME/../applications/utilities
4. run command: svn co http://svn.code.sf.net/p/openfoam-ex...her/waves2Foam
5. run command: cd waves2Foam/
6. run command: ./Allwmake
7. waves2Foam should now be compiled; type 'whereis waveFoam', bash should return '/opt/OpenFOAM/OpenFOAM-v1912/platforms/linux64Gcc63DPInt32Opt/bin/waveFoam'

Last edited by bknorris; December 18, 2020 at 14:58. Reason: formatting
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Old   December 18, 2020, 22:26
Default OFv1712 source and details
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Luiz Ferreira
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Dear Vahid,

I would strongly suggest to you to use OFv1712 rather OFv2006. Here is the link of the respository for the version https://sourceforge.net/projects/openfoam/files/v1712/

Also, I don't believe that waves2Foam has v2006 version.

Finally, to find the bashr of OpenFOAM, you need to search for the etc folder the OpenFOAM installation. For example,
/home/<Folder where is installed your OpenFOAM>/etc

In a more tangible sample, considering that you are using OFv2006:
/home/OpenFOAM-v2006/etc

There will be the bashrc.

Obs.: if you compiled the source code you don't need to change the bashrc because it will be already at system compiler.

Cheers,

LP

Quote:
Originally Posted by va-ta-cfd View Post
Dear Luiz
Hi,

Can you explain more how to select system compiler? I cant find it in nano bashrc page

It is for some days that I am trying to install waves2Foam on Ubuntu 18.04. No success

I have tried OpenFoam3.0.1 but failed.

Now I have installed openFoam v2006 from source code in HOME folder (I was going to install 1712, but it is no longer available on https://www.openfoam.com/ ).

I have done all steps I see in this thread but still no success.
I have attached the log file when making waves2FOAM on OFv2006:
Attachment 81627

I really appreciate if anyone could help.

Best Regards,
Vahid
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Old   December 19, 2020, 12:57
Default
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Vahid
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Hello Every one,

Many thanks for quick reply.
I will do your instructions and get back soon.

Regards,
Vahid
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Old   December 19, 2020, 16:47
Default
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Quote:
Originally Posted by lppferreira View Post
Dear Vahid,

I would strongly suggest to you to use OFv1712 rather OFv2006. Here is the link of the respository for the version https://sourceforge.net/projects/openfoam/files/v1712/

Also, I don't believe that waves2Foam has v2006 version.

Finally, to find the bashr of OpenFOAM, you need to search for the etc folder the OpenFOAM installation. For example,
/home/<Folder where is installed your OpenFOAM>/etc

In a more tangible sample, considering that you are using OFv2006:
/home/OpenFOAM-v2006/etc

There will be the bashrc.

Obs.: if you compiled the source code you don't need to change the bashrc because it will be already at system compiler.

Cheers,

LP
Thank you Luiz and Benjamin,
I finally made it

As Luiz said, I installed OFv1712 from source code on my Ubuntu18.04.
Then downloaded and compiled Wave2Foam exactly according to instructions in its manual.

For installing GNU SCIENTIFIC LIBRARY (GSL) dependencies, I found following page helpful:
GSL

I also tried to install waves2Foam on Ubuntu WSL (on windows10), but it was not successful. I compiled waves2Foam but the tutorials didn't run.

Anyway, thank you all for your time.

Best Regards,
Vahid
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Old   December 28, 2020, 06:31
Default cannot find -lwaves2Foam
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Quote:
Originally Posted by emiliouk View Post
Just wanted to add the "solution" I found. i downloaded and installed the v1712, from the source code, recompiled in Ubuntu, i didn't even need to change the bashrc file in the bin folder, when i compiled the waves2FOAM i noticed errors regarding missing lgsl, i installed via Synaptic all the packages that appeared when i searched for lgsl, re-tried, and everything this time worked fine and i could run the waveFlume tutorial.


Cheers,
Emilio
Hello
I install wave2foam in OF1812 in centos, get the error "cannot find -lwaves2Foam"

Could you give some tips, please. Many Thanks.
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Old   December 28, 2020, 09:12
Default Compile ThirdParty VTL
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Luiz Ferreira
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You need to compile the thirdparty inside waves2foam. AfterShip you need tô compile Ocean3d again.
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Old   December 28, 2020, 09:30
Default cannot find -lwaves2Foam
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Quote:
Originally Posted by MattS View Post
Hi Niels,


Thank you for the reply!


I was actually just able to compile it successfully! When I checked out the repository yesterday, I may have made a mistake and ended up with the older version.


I checked it out again today, and upon sourcing bin/bashrc, the OF version number v1812 now displayed correctly, and everything worked fine for the waves2Foam compilation.



Thanks so much for your work and your support on here!


Matt
Hello
I also install wave2foam in of1812 centos 7, i get error "cannot find -lwaves2Foam"
Could you give some tips please, thanks.
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Old   December 28, 2020, 22:42
Default cannot find -lwaves2Foam
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Hello
I also install wave2foam in OF1812 Centos 7, but i got error:
cannot find -lgfortran
cannot find -lwaves2Foam
Could you give me some hints, please.
Thanks
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Old   December 29, 2020, 15:14
Default wave2foam of1812
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Quote:
Originally Posted by lppferreira View Post
Ubuntu and v1912.

Step by Step:

sudo apt-get update && sudo apt-get upgrade
sudo apt-get install gcc g++ gfortran gsl-bin make
sudo apt-get install m4 bison flex subversion ptscotch cmake
sudo apt-get install mpi-default-dev wget
sudo apt-get install libz-dev libgsl-dev vim nano git

cd $WM_PROJECT_DIR/etc
nano bashrc

Select the system compiler ->Go to the line where is written WM_COMPILER TYPE
export WM_COMPILER_TYPE=system
source $HOME/.basrhrc

Compile waves2FOAM. If you have some problem at Ocean3D-Fortran go to the folder thirdparty and compile the VTK.
Thousand thanks to your tip. I can compile wave2foam in of1812 centos 7
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Old   June 29, 2022, 12:15
Default Issue in waves2foam installation
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Sandana Socrates
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Dear all,

I am facing an issue with waves2Foam installation in Ubuntu 22.04 with OpenFOAM-v2012. can anyone help me to find this issue?



thanks
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Old   November 6, 2023, 12:42
Default Issue with waves2foam with openfoamv2012
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Kossivi GOKPI
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Hello Sandana,

I'm facing an issue installing the version 2012 of openfoam with the same issues that yours. Did you find any solutions to them?

Thanks.
Kossivi
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Thanks in advance,

Kossivi.
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Old   April 27, 2024, 17:46
Default waves2Foam Compilation error openfoamv2312
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abdulsalam musaad
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Hi Kossivi,



I am facing similar error to what Sandana has attached. i am using openfoamv2312. Please let me know if you found a solution to this problem.



Thanks in advance.


%%%%%%%%%%%
i found the solution to this problem in this thread:
Compilation on Ubuntu 22.04

Last edited by AbdoMusaad; April 28, 2024 at 08:16.
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