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Unable to run 3dTube tutorial in parallel (solids4foam)

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Old   April 5, 2023, 12:37
Default Unable to run 3dTube tutorial in parallel (solids4foam)
  #1
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Join Date: Apr 2023
Posts: 2
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ff99 is on a distinguished road
Hello all,


I tried to change the Allrun.pimpleFluid.sh script to run the 3dTube tutorial case in parallel.


This is the changed script:


Code:
#!/bin/bash

# Source tutorial run functions
. $WM_PROJECT_DIR/bin/tools/RunFunctions

# Link files for sonicLiquidFiles
for file in $(find ./0 ./constant ./system -name '*.pimpleFluid')
do
    ln -vnsf ${file##*/} ${file%.*}
done

# Source solids4Foam scripts
source solids4FoamScripts.sh

# Check case version is correct
solids4Foam::convertCaseFormat .

# Create meshes
solids4Foam::runApplication -s solid blockMesh -region solid
solids4Foam::runApplication -s fluid blockMesh -region fluid


decomposePar -region solid
decomposePar -region fluid

# Run solver
#solids4Foam::runApplication solids4Foam
 mpirun -np 4 solids4Foam -parallel

But I am getting fatal errors when I run this script:


Code:
Interpolating point values using AMI
[0]
[0]
[0] --> FOAM FATAL ERROR: (openfoam-2012)
[0] bad size -1651910499
[0]
[0]     From Foam::List<T>::List(Foam::label) [with T = Foam::Vector<double>; Foam::label = int]
[0]     in file /opt/OpenFOAM/OpenFOAM-v2012/src/OpenFOAM/lnInclude/List.C at line 100.
[0]
FOAM parallel run aborting
[0]
[1] #0  Foam::error::printStack(Foam::Ostream&)[2] #0  Foam::error::printStack(Foam::Ostream&)[3] #0  Foam::error::printStack(Foam::Ostream&)[0] #0  Foam::error::printStack(Foam::Ostream&) at ??:?
 at ??:?
 at ??:?
[1] #1  Foam::sigSegv::sigHandler(int)[2] #1  Foam::sigSegv::sigHandler(int)[3] #1  Foam::sigSegv::sigHandler(int) at ??:?
[0] #1  Foam::error::exitOrAbort(int, bool) at ??:?
 at ??:?
[2] #2  ?[0] #2  Foam::List<Foam::Vector<double> >::List(int) at ??:?
[1] #2  ? at ??:?
[3] #2  ? in /lib/x86_64-linux-gnu/libc.so.6
[2] #3  Foam::interfaceToInterfaceMappings::amiInterfaceToInterfaceMapping::calcZoneAPointAddressing() const in /lib/x86_64-linux-gnu/libc.so.6
[1] #3  Foam::interfaceToInterfaceMappings::amiInterfaceToInterfaceMapping::calcZoneAPointAddressing() const in /lib/x86_64-linux-gnu/libc.so.6
[3] #3  Foam::interfaceToInterfaceMappings::amiInterfaceToInterfaceMapping::calcZoneAPointAddressing() const at ??:?
[0] #3  Foam::interfaceToInterfaceMappings::amiInterfaceToInterfaceMapping::calcZoneAPointAddressing() const at ??:?
[2] #4  Foam::interfaceToInterfaceMappings::amiInterfaceToInterfaceMapping::zoneAPointAddr() const at ??:?
[3] #4  Foam::interfaceToInterfaceMappings::amiInterfaceToInterfaceMapping::zoneAPointAddr() const at ??:?
[1] #4  Foam::interfaceToInterfaceMappings::amiInterfaceToInterfaceMapping::zoneAPointAddr() const at ??:?
[0] #4  Foam::interfaceToInterfaceMappings::amiInterfaceToInterfaceMapping::zoneAPointAddr() const at ??:?
 at ??:?
[2] #5  void Foam::interfaceToInterfaceMappings::amiInterfaceToInterfaceMapping::transferPointsZoneToZone<Foam::Vector<double> >(Foam::PrimitivePatch<Foam::List<Foam::face>, Foam::Field<Foam::Vector<double> > > const&, Foam::PrimitivePatch<Foam::List<Foam::face>, Foam::Field<Foam::Vector<double> > > const&, Foam::Field<Foam::Vector<double> > const&, Foam::Field<Foam::Vector<double> >&) const at ??:?
[3] #5  [1] #5  void Foam::interfaceToInterfaceMappings::amiInterfaceToInterfaceMapping::transferPointsZoneToZone<Foam::Vector<double> >(Foam::PrimitivePatch<Foam::List<Foam::face>, Foam::Field<Foam::Vector<double> > > const&, Foam::PrimitivePatch<Foam::List<Foam::face>, Foam::Field<Foam::Vector<double> > > const&, Foam::Field<Foam::Vector<double> > const&, Foam::Field<Foam::Vector<double> >&) constvoid Foam::interfaceToInterfaceMappings::amiInterfaceToInterfaceMapping::transferPointsZoneToZone<Foam::Vector<double> >(Foam::PrimitivePatch<Foam::List<Foam::face>, Foam::Field<Foam::Vector<double> > > const&, Foam::PrimitivePatch<Foam::List<Foam::face>, Foam::Field<Foam::Vector<double> > > const&, Foam::Field<Foam::Vector<double> > const&, Foam::Field<Foam::Vector<double> >&) const at ??:?
[0] #5  void Foam::interfaceToInterfaceMappings::amiInterfaceToInterfaceMapping::transferPointsZoneToZone<Foam::Vector<double> >(Foam::PrimitivePatch<Foam::List<Foam::face>, Foam::Field<Foam::Vector<double> > > const&, Foam::PrimitivePatch<Foam::List<Foam::face>, Foam::Field<Foam::Vector<double> > > const&, Foam::Field<Foam::Vector<double> > const&, Foam::Field<Foam::Vector<double> >&) const at ??:?
 at ??:?
 at ??:?
[1] #6  Foam::fluidSolidInterface::updateResidual()[2] #6  Foam::fluidSolidInterface::updateResidual()[3] #6  Foam::fluidSolidInterface::updateResidual() at ??:?
[0] #6  Foam::fluidSolidInterface::updateResidual() at ??:?
 at ??:?
[3] #7   at ??:?
Foam::fluidSolidInterfaces::AitkenCouplingInterface::evolve()[2] #7  Foam::fluidSolidInterfaces::AitkenCouplingInterface::evolve()[1] #7  Foam::fluidSolidInterfaces::AitkenCouplingInterface::evolve() at ??:?
[0] #7  Foam::fluidSolidInterfaces::AitkenCouplingInterface::evolve() at ??:?
[3] #8   at ??:?
[1] #8   at ??:?
[2] #8  ??? at ??:?
[1] #9  ? at ??:?
[2] #9  ? at ??:?
[3] #9  ? at ??:?
[0] #8  ? in /lib/x86_64-linux-gnu/libc.so.6
[3] #10  __libc_start_main in /lib/x86_64-linux-gnu/libc.so.6
[1] #10  __libc_start_main in /lib/x86_64-linux-gnu/libc.so.6
[2] #10  __libc_start_main at ??:?
[0] #9  ? in /lib/x86_64-linux-gnu/libc.so.6
[2] #11   in /lib/x86_64-linux-gnu/libc.so.6
[3] #11   in /lib/x86_64-linux-gnu/libc.so.6
[1] #11   in /lib/x86_64-linux-gnu/libc.so.6
[0] #10  __libc_start_main??? at ??:?
 in /lib/x86_64-linux-gnu/libc.so.6
[0] #11  [SrcCodes:07701] *** Process received signal ***
[SrcCodes:07701] Signal: Segmentation fault (11)
[SrcCodes:07701] Signal code:  (-6)
[SrcCodes:07701] Failing at address: 0x3e800001e15
[SrcCodes:07701] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f274e01a520]
[SrcCodes:07701] [ 1] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f274e06ea7c]
[SrcCodes:07701] [ 2] /lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f274e01a476]
[SrcCodes:07701] [ 3] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f274e01a520]
[SrcCodes:07701] [ 4]  at ??:?
[SrcCodes:07700] *** Process received signal ***
[SrcCodes:07700] Signal: Segmentation fault (11)
[SrcCodes:07700] Signal code:  (-6)
[SrcCodes:07700] Failing at address: 0x3e800001e14
 at ??:?
[SrcCodes:07700] [ 0] [SrcCodes:07699] *** Process received signal ***
[SrcCodes:07699] Signal: Segmentation fault (11)
[SrcCodes:07699] Signal code:  (-6)
[SrcCodes:07699] Failing at address: 0x3e800001e13
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f64bce1a520]
[SrcCodes:07700] [ 1] [SrcCodes:07699] [ 0] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f64bce6ea7c]
[SrcCodes:07700] [ 2] /lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f64bce1a476]
[SrcCodes:07700] [ 3] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f82bfa1a520]
[SrcCodes:07699] [ 1] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f64bce1a520]
[SrcCodes:07700] [ 4] /home/farf/OpenFOAM/farf-v2012/platforms/linux64Gcc63DPInt32Opt/lib/libsolids4FoamModels.so(_ZNK4Foam28interfaceToInterfaceMappings30amiInterfaceToInterfaceMapping24calcZoneAPointAddressingEv+0x480)[0x7f274fc82600]
[SrcCodes:07701] [ 5] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f82bfa6ea7c]
[SrcCodes:07699] [ 2] /lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f82bfa1a476]
[SrcCodes:07699] [ 3] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f82bfa1a520]
[SrcCodes:07699] [ 4] /home/farf/OpenFOAM/farf-v2012/platforms/linux64Gcc63DPInt32Opt/lib/libsolids4FoamModels.so(_ZNK4Foam28interfaceToInterfaceMappings30amiInterfaceToInterfaceMapping24calcZoneAPointAddressingEv+0x480)[0x7f64bea2d600]
[SrcCodes:07700] [ 5] /home/farf/OpenFOAM/farf-v2012/platforms/linux64Gcc63DPInt32Opt/lib/libsolids4FoamModels.so(_ZNK4Foam28interfaceToInterfaceMappings30amiInterfaceToInterfaceMapping14zoneAPointAddrEv+0x19)[0x7f274fc83049]
[SrcCodes:07701] [ 6] /home/farf/OpenFOAM/farf-v2012/platforms/linux64Gcc63DPInt32Opt/lib/libsolids4FoamModels.so(_ZNK4Foam28interfaceToInterfaceMappings30amiInterfaceToInterfaceMapping24calcZoneAPointAddressingEv+0x480)[0x7f82c150d600]
[SrcCodes:07699] [ 5] /home/farf/OpenFOAM/farf-v2012/platforms/linux64Gcc63DPInt32Opt/lib/libsolids4FoamModels.so(_ZNK4Foam28interfaceToInterfaceMappings30amiInterfaceToInterfaceMapping24transferPointsZoneToZoneINS_6VectorIdEEEEvRKNS_14PrimitivePatchINS_4ListINS_4faceEEENS_5FieldIS4_EEEESD_RKNS9_IT_EERSF_+0x594)[0x7f274fc87ee4]
[SrcCodes:07701] [ 7] /home/farf/OpenFOAM/farf-v2012/platforms/linux64Gcc63DPInt32Opt/lib/libsolids4FoamModels.so(_ZNK4Foam28interfaceToInterfaceMappings30amiInterfaceToInterfaceMapping14zoneAPointAddrEv+0x19)[0x7f64bea2e049]
[SrcCodes:07700] [ 6] /home/farf/OpenFOAM/farf-v2012/platforms/linux64Gcc63DPInt32Opt/lib/libsolids4FoamModels.so(_ZNK4Foam28interfaceToInterfaceMappings30amiInterfaceToInterfaceMapping14zoneAPointAddrEv+0x19)[0x7f82c150e049]
[SrcCodes:07699] [ 6] /home/farf/OpenFOAM/farf-v2012/platforms/linux64Gcc63DPInt32Opt/lib/libsolids4FoamModels.so(_ZNK4Foam28interfaceToInterfaceMappings30amiInterfaceToInterfaceMapping24transferPointsZoneToZoneINS_6VectorIdEEEEvRKNS_14PrimitivePatchINS_4ListINS_4faceEEENS_5FieldIS4_EEEESD_RKNS9_IT_EERSF_+0x594)[0x7f64bea32ee4]
[SrcCodes:07700] [ 7] /home/farf/OpenFOAM/farf-v2012/platforms/linux64Gcc63DPInt32Opt/lib/libsolids4FoamModels.so(_ZN4Foam19fluidSolidInterface14updateResidualEv+0x1e2)[0x7f274fc67262]
[SrcCodes:07701] [ 8] /home/farf/OpenFOAM/farf-v2012/platforms/linux64Gcc63DPInt32Opt/lib/libsolids4FoamModels.so(_ZNK4Foam28interfaceToInterfaceMappings30amiInterfaceToInterfaceMapping24transferPointsZoneToZoneINS_6VectorIdEEEEvRKNS_14PrimitivePatchINS_4ListINS_4faceEEENS_5FieldIS4_EEEESD_RKNS9_IT_EERSF_+0x594)[0x7f82c1512ee4]
[SrcCodes:07699] [ 7] /home/farf/OpenFOAM/farf-v2012/platforms/linux64Gcc63DPInt32Opt/lib/libsolids4FoamModels.so(_ZN4Foam20fluidSolidInterfaces23AitkenCouplingInterface6evolveEv+0x6d8)[0x7f274fc721a8]
[SrcCodes:07701] [ 9] solids4Foam[0x4025fc]
[SrcCodes:07701] [10] /home/farf/OpenFOAM/farf-v2012/platforms/linux64Gcc63DPInt32Opt/lib/libsolids4FoamModels.so(_ZN4Foam19fluidSolidInterface14updateResidualEv+0x1e2)[0x7f64bea12262]
[SrcCodes:07700] [ 8] /home/farf/OpenFOAM/farf-v2012/platforms/linux64Gcc63DPInt32Opt/lib/libsolids4FoamModels.so(_ZN4Foam19fluidSolidInterface14updateResidualEv+0x1e2)[0x7f82c14f2262]
[SrcCodes:07699] [ 8] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f274e001d90]
[SrcCodes:07701] [11] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f274e001e40]
[SrcCodes:07701] [12] solids4Foam[0x4032d5]
[SrcCodes:07701] *** End of error message ***
/home/farf/OpenFOAM/farf-v2012/platforms/linux64Gcc63DPInt32Opt/lib/libsolids4FoamModels.so(_ZN4Foam20fluidSolidInterfaces23AitkenCouplingInterface6evolveEv+0x6d8)[0x7f64bea1d1a8]
[SrcCodes:07700] [ 9] solids4Foam[0x4025fc]
[SrcCodes:07700] [10] /home/farf/OpenFOAM/farf-v2012/platforms/linux64Gcc63DPInt32Opt/lib/libsolids4FoamModels.so(_ZN4Foam20fluidSolidInterfaces23AitkenCouplingInterface6evolveEv+0x6d8)[0x7f82c14fd1a8]
[SrcCodes:07699] [ 9] solids4Foam[0x4025fc]
[SrcCodes:07699] [10] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f64bce01d90]
[SrcCodes:07700] [11] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f64bce01e40]
[SrcCodes:07700] [12] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f82bfa01d90]
[SrcCodes:07699] [11] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f82bfa01e40]
[SrcCodes:07699] [12] solids4Foam[0x4032d5]
[SrcCodes:07699] *** End of error message ***
solids4Foam[0x4032d5]
[SrcCodes:07700] *** End of error message ***
? at ??:?
--------------------------------------------------------------------------
Primary job  terminated normally, but 1 process returned
a non-zero exit code. Per user-direction, the job has been aborted.
--------------------------------------------------------------------------
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 1.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------
[SrcCodes:07694] PMIX ERROR: UNREACHABLE in file /home/pawan/OpenFOAM/ThirdParty-v2006/openmpi-4.0.3/opal/mca/pmix/pmix3x/pmix/src/server/pmix_server.c at line 2193
--------------------------------------------------------------------------
mpirun noticed that process rank 2 with PID 0 on node SrcCodes exited on signal 11 (Segmentation fault).
I attached the full output just in case.

The code runs well in serial. Could you please tell me if the Allrun.pimpleFluid.sh is correct? If so, what should I do to run this tutorial in parallel?
Attached Files
File Type: txt ouput.txt (30.8 KB, 0 views)
ff99 is offline   Reply With Quote

Old   June 3, 2023, 20:39
Default
  #2
New Member
 
Join Date: Jan 2018
Posts: 19
Rep Power: 8
Zhi Cheng is on a distinguished road
Have you solved this problem? I am being faced with the same issues. Many thanks!

Zhi

Quote:
Originally Posted by ff99 View Post
Hello all,


I tried to change the Allrun.pimpleFluid.sh script to run the 3dTube tutorial case in parallel.


This is the changed script:


Code:
#!/bin/bash

# Source tutorial run functions
. $WM_PROJECT_DIR/bin/tools/RunFunctions

# Link files for sonicLiquidFiles
for file in $(find ./0 ./constant ./system -name '*.pimpleFluid')
do
    ln -vnsf ${file##*/} ${file%.*}
done

# Source solids4Foam scripts
source solids4FoamScripts.sh

# Check case version is correct
solids4Foam::convertCaseFormat .

# Create meshes
solids4Foam::runApplication -s solid blockMesh -region solid
solids4Foam::runApplication -s fluid blockMesh -region fluid


decomposePar -region solid
decomposePar -region fluid

# Run solver
#solids4Foam::runApplication solids4Foam
 mpirun -np 4 solids4Foam -parallel

But I am getting fatal errors when I run this script:


Code:
Interpolating point values using AMI
[0]
[0]
[0] --> FOAM FATAL ERROR: (openfoam-2012)
[0] bad size -1651910499
[0]
[0]     From Foam::List<T>::List(Foam::label) [with T = Foam::Vector<double>; Foam::label = int]
[0]     in file /opt/OpenFOAM/OpenFOAM-v2012/src/OpenFOAM/lnInclude/List.C at line 100.
[0]
FOAM parallel run aborting
[0]
[1] #0  Foam::error::printStack(Foam::Ostream&)[2] #0  Foam::error::printStack(Foam::Ostream&)[3] #0  Foam::error::printStack(Foam::Ostream&)[0] #0  Foam::error::printStack(Foam::Ostream&) at ??:?
 at ??:?
 at ??:?
[1] #1  Foam::sigSegv::sigHandler(int)[2] #1  Foam::sigSegv::sigHandler(int)[3] #1  Foam::sigSegv::sigHandler(int) at ??:?
[0] #1  Foam::error::exitOrAbort(int, bool) at ??:?
 at ??:?
[2] #2  ?[0] #2  Foam::List<Foam::Vector<double> >::List(int) at ??:?
[1] #2  ? at ??:?
[3] #2  ? in /lib/x86_64-linux-gnu/libc.so.6
[2] #3  Foam::interfaceToInterfaceMappings::amiInterfaceToInterfaceMapping::calcZoneAPointAddressing() const in /lib/x86_64-linux-gnu/libc.so.6
[1] #3  Foam::interfaceToInterfaceMappings::amiInterfaceToInterfaceMapping::calcZoneAPointAddressing() const in /lib/x86_64-linux-gnu/libc.so.6
[3] #3  Foam::interfaceToInterfaceMappings::amiInterfaceToInterfaceMapping::calcZoneAPointAddressing() const at ??:?
[0] #3  Foam::interfaceToInterfaceMappings::amiInterfaceToInterfaceMapping::calcZoneAPointAddressing() const at ??:?
[2] #4  Foam::interfaceToInterfaceMappings::amiInterfaceToInterfaceMapping::zoneAPointAddr() const at ??:?
[3] #4  Foam::interfaceToInterfaceMappings::amiInterfaceToInterfaceMapping::zoneAPointAddr() const at ??:?
[1] #4  Foam::interfaceToInterfaceMappings::amiInterfaceToInterfaceMapping::zoneAPointAddr() const at ??:?
[0] #4  Foam::interfaceToInterfaceMappings::amiInterfaceToInterfaceMapping::zoneAPointAddr() const at ??:?
 at ??:?
[2] #5  void Foam::interfaceToInterfaceMappings::amiInterfaceToInterfaceMapping::transferPointsZoneToZone<Foam::Vector<double> >(Foam::PrimitivePatch<Foam::List<Foam::face>, Foam::Field<Foam::Vector<double> > > const&, Foam::PrimitivePatch<Foam::List<Foam::face>, Foam::Field<Foam::Vector<double> > > const&, Foam::Field<Foam::Vector<double> > const&, Foam::Field<Foam::Vector<double> >&) const at ??:?
[3] #5  [1] #5  void Foam::interfaceToInterfaceMappings::amiInterfaceToInterfaceMapping::transferPointsZoneToZone<Foam::Vector<double> >(Foam::PrimitivePatch<Foam::List<Foam::face>, Foam::Field<Foam::Vector<double> > > const&, Foam::PrimitivePatch<Foam::List<Foam::face>, Foam::Field<Foam::Vector<double> > > const&, Foam::Field<Foam::Vector<double> > const&, Foam::Field<Foam::Vector<double> >&) constvoid Foam::interfaceToInterfaceMappings::amiInterfaceToInterfaceMapping::transferPointsZoneToZone<Foam::Vector<double> >(Foam::PrimitivePatch<Foam::List<Foam::face>, Foam::Field<Foam::Vector<double> > > const&, Foam::PrimitivePatch<Foam::List<Foam::face>, Foam::Field<Foam::Vector<double> > > const&, Foam::Field<Foam::Vector<double> > const&, Foam::Field<Foam::Vector<double> >&) const at ??:?
[0] #5  void Foam::interfaceToInterfaceMappings::amiInterfaceToInterfaceMapping::transferPointsZoneToZone<Foam::Vector<double> >(Foam::PrimitivePatch<Foam::List<Foam::face>, Foam::Field<Foam::Vector<double> > > const&, Foam::PrimitivePatch<Foam::List<Foam::face>, Foam::Field<Foam::Vector<double> > > const&, Foam::Field<Foam::Vector<double> > const&, Foam::Field<Foam::Vector<double> >&) const at ??:?
 at ??:?
 at ??:?
[1] #6  Foam::fluidSolidInterface::updateResidual()[2] #6  Foam::fluidSolidInterface::updateResidual()[3] #6  Foam::fluidSolidInterface::updateResidual() at ??:?
[0] #6  Foam::fluidSolidInterface::updateResidual() at ??:?
 at ??:?
[3] #7   at ??:?
Foam::fluidSolidInterfaces::AitkenCouplingInterface::evolve()[2] #7  Foam::fluidSolidInterfaces::AitkenCouplingInterface::evolve()[1] #7  Foam::fluidSolidInterfaces::AitkenCouplingInterface::evolve() at ??:?
[0] #7  Foam::fluidSolidInterfaces::AitkenCouplingInterface::evolve() at ??:?
[3] #8   at ??:?
[1] #8   at ??:?
[2] #8  ??? at ??:?
[1] #9  ? at ??:?
[2] #9  ? at ??:?
[3] #9  ? at ??:?
[0] #8  ? in /lib/x86_64-linux-gnu/libc.so.6
[3] #10  __libc_start_main in /lib/x86_64-linux-gnu/libc.so.6
[1] #10  __libc_start_main in /lib/x86_64-linux-gnu/libc.so.6
[2] #10  __libc_start_main at ??:?
[0] #9  ? in /lib/x86_64-linux-gnu/libc.so.6
[2] #11   in /lib/x86_64-linux-gnu/libc.so.6
[3] #11   in /lib/x86_64-linux-gnu/libc.so.6
[1] #11   in /lib/x86_64-linux-gnu/libc.so.6
[0] #10  __libc_start_main??? at ??:?
 in /lib/x86_64-linux-gnu/libc.so.6
[0] #11  [SrcCodes:07701] *** Process received signal ***
[SrcCodes:07701] Signal: Segmentation fault (11)
[SrcCodes:07701] Signal code:  (-6)
[SrcCodes:07701] Failing at address: 0x3e800001e15
[SrcCodes:07701] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f274e01a520]
[SrcCodes:07701] [ 1] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f274e06ea7c]
[SrcCodes:07701] [ 2] /lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f274e01a476]
[SrcCodes:07701] [ 3] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f274e01a520]
[SrcCodes:07701] [ 4]  at ??:?
[SrcCodes:07700] *** Process received signal ***
[SrcCodes:07700] Signal: Segmentation fault (11)
[SrcCodes:07700] Signal code:  (-6)
[SrcCodes:07700] Failing at address: 0x3e800001e14
 at ??:?
[SrcCodes:07700] [ 0] [SrcCodes:07699] *** Process received signal ***
[SrcCodes:07699] Signal: Segmentation fault (11)
[SrcCodes:07699] Signal code:  (-6)
[SrcCodes:07699] Failing at address: 0x3e800001e13
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f64bce1a520]
[SrcCodes:07700] [ 1] [SrcCodes:07699] [ 0] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f64bce6ea7c]
[SrcCodes:07700] [ 2] /lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f64bce1a476]
[SrcCodes:07700] [ 3] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f82bfa1a520]
[SrcCodes:07699] [ 1] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f64bce1a520]
[SrcCodes:07700] [ 4] /home/farf/OpenFOAM/farf-v2012/platforms/linux64Gcc63DPInt32Opt/lib/libsolids4FoamModels.so(_ZNK4Foam28interfaceToInterfaceMappings30amiInterfaceToInterfaceMapping24calcZoneAPointAddressingEv+0x480)[0x7f274fc82600]
[SrcCodes:07701] [ 5] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f82bfa6ea7c]
[SrcCodes:07699] [ 2] /lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f82bfa1a476]
[SrcCodes:07699] [ 3] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f82bfa1a520]
[SrcCodes:07699] [ 4] /home/farf/OpenFOAM/farf-v2012/platforms/linux64Gcc63DPInt32Opt/lib/libsolids4FoamModels.so(_ZNK4Foam28interfaceToInterfaceMappings30amiInterfaceToInterfaceMapping24calcZoneAPointAddressingEv+0x480)[0x7f64bea2d600]
[SrcCodes:07700] [ 5] /home/farf/OpenFOAM/farf-v2012/platforms/linux64Gcc63DPInt32Opt/lib/libsolids4FoamModels.so(_ZNK4Foam28interfaceToInterfaceMappings30amiInterfaceToInterfaceMapping14zoneAPointAddrEv+0x19)[0x7f274fc83049]
[SrcCodes:07701] [ 6] /home/farf/OpenFOAM/farf-v2012/platforms/linux64Gcc63DPInt32Opt/lib/libsolids4FoamModels.so(_ZNK4Foam28interfaceToInterfaceMappings30amiInterfaceToInterfaceMapping24calcZoneAPointAddressingEv+0x480)[0x7f82c150d600]
[SrcCodes:07699] [ 5] /home/farf/OpenFOAM/farf-v2012/platforms/linux64Gcc63DPInt32Opt/lib/libsolids4FoamModels.so(_ZNK4Foam28interfaceToInterfaceMappings30amiInterfaceToInterfaceMapping24transferPointsZoneToZoneINS_6VectorIdEEEEvRKNS_14PrimitivePatchINS_4ListINS_4faceEEENS_5FieldIS4_EEEESD_RKNS9_IT_EERSF_+0x594)[0x7f274fc87ee4]
[SrcCodes:07701] [ 7] /home/farf/OpenFOAM/farf-v2012/platforms/linux64Gcc63DPInt32Opt/lib/libsolids4FoamModels.so(_ZNK4Foam28interfaceToInterfaceMappings30amiInterfaceToInterfaceMapping14zoneAPointAddrEv+0x19)[0x7f64bea2e049]
[SrcCodes:07700] [ 6] /home/farf/OpenFOAM/farf-v2012/platforms/linux64Gcc63DPInt32Opt/lib/libsolids4FoamModels.so(_ZNK4Foam28interfaceToInterfaceMappings30amiInterfaceToInterfaceMapping14zoneAPointAddrEv+0x19)[0x7f82c150e049]
[SrcCodes:07699] [ 6] /home/farf/OpenFOAM/farf-v2012/platforms/linux64Gcc63DPInt32Opt/lib/libsolids4FoamModels.so(_ZNK4Foam28interfaceToInterfaceMappings30amiInterfaceToInterfaceMapping24transferPointsZoneToZoneINS_6VectorIdEEEEvRKNS_14PrimitivePatchINS_4ListINS_4faceEEENS_5FieldIS4_EEEESD_RKNS9_IT_EERSF_+0x594)[0x7f64bea32ee4]
[SrcCodes:07700] [ 7] /home/farf/OpenFOAM/farf-v2012/platforms/linux64Gcc63DPInt32Opt/lib/libsolids4FoamModels.so(_ZN4Foam19fluidSolidInterface14updateResidualEv+0x1e2)[0x7f274fc67262]
[SrcCodes:07701] [ 8] /home/farf/OpenFOAM/farf-v2012/platforms/linux64Gcc63DPInt32Opt/lib/libsolids4FoamModels.so(_ZNK4Foam28interfaceToInterfaceMappings30amiInterfaceToInterfaceMapping24transferPointsZoneToZoneINS_6VectorIdEEEEvRKNS_14PrimitivePatchINS_4ListINS_4faceEEENS_5FieldIS4_EEEESD_RKNS9_IT_EERSF_+0x594)[0x7f82c1512ee4]
[SrcCodes:07699] [ 7] /home/farf/OpenFOAM/farf-v2012/platforms/linux64Gcc63DPInt32Opt/lib/libsolids4FoamModels.so(_ZN4Foam20fluidSolidInterfaces23AitkenCouplingInterface6evolveEv+0x6d8)[0x7f274fc721a8]
[SrcCodes:07701] [ 9] solids4Foam[0x4025fc]
[SrcCodes:07701] [10] /home/farf/OpenFOAM/farf-v2012/platforms/linux64Gcc63DPInt32Opt/lib/libsolids4FoamModels.so(_ZN4Foam19fluidSolidInterface14updateResidualEv+0x1e2)[0x7f64bea12262]
[SrcCodes:07700] [ 8] /home/farf/OpenFOAM/farf-v2012/platforms/linux64Gcc63DPInt32Opt/lib/libsolids4FoamModels.so(_ZN4Foam19fluidSolidInterface14updateResidualEv+0x1e2)[0x7f82c14f2262]
[SrcCodes:07699] [ 8] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f274e001d90]
[SrcCodes:07701] [11] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f274e001e40]
[SrcCodes:07701] [12] solids4Foam[0x4032d5]
[SrcCodes:07701] *** End of error message ***
/home/farf/OpenFOAM/farf-v2012/platforms/linux64Gcc63DPInt32Opt/lib/libsolids4FoamModels.so(_ZN4Foam20fluidSolidInterfaces23AitkenCouplingInterface6evolveEv+0x6d8)[0x7f64bea1d1a8]
[SrcCodes:07700] [ 9] solids4Foam[0x4025fc]
[SrcCodes:07700] [10] /home/farf/OpenFOAM/farf-v2012/platforms/linux64Gcc63DPInt32Opt/lib/libsolids4FoamModels.so(_ZN4Foam20fluidSolidInterfaces23AitkenCouplingInterface6evolveEv+0x6d8)[0x7f82c14fd1a8]
[SrcCodes:07699] [ 9] solids4Foam[0x4025fc]
[SrcCodes:07699] [10] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f64bce01d90]
[SrcCodes:07700] [11] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f64bce01e40]
[SrcCodes:07700] [12] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f82bfa01d90]
[SrcCodes:07699] [11] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f82bfa01e40]
[SrcCodes:07699] [12] solids4Foam[0x4032d5]
[SrcCodes:07699] *** End of error message ***
solids4Foam[0x4032d5]
[SrcCodes:07700] *** End of error message ***
? at ??:?
--------------------------------------------------------------------------
Primary job  terminated normally, but 1 process returned
a non-zero exit code. Per user-direction, the job has been aborted.
--------------------------------------------------------------------------
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 1.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------
[SrcCodes:07694] PMIX ERROR: UNREACHABLE in file /home/pawan/OpenFOAM/ThirdParty-v2006/openmpi-4.0.3/opal/mca/pmix/pmix3x/pmix/src/server/pmix_server.c at line 2193
--------------------------------------------------------------------------
mpirun noticed that process rank 2 with PID 0 on node SrcCodes exited on signal 11 (Segmentation fault).
I attached the full output just in case.

The code runs well in serial. Could you please tell me if the Allrun.pimpleFluid.sh is correct? If so, what should I do to run this tutorial in parallel?
Zhi Cheng is offline   Reply With Quote

Old   June 7, 2023, 15:37
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Quote:
Originally Posted by Zhi Cheng View Post
Have you solved this problem? I am being faced with the same issues. Many thanks!

Zhi

Hello,


No, I haven't.



Thanks.
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