CFD Online Logo CFD Online URL
www.cfd-online.com
[Sponsors]
Home > Forums > Software User Forums > ANSYS > FLUENT

Partitioning Error on HPC: ***Cannot bisect a graph with 0 vertices!

Register Blogs Community New Posts Updated Threads Search

Reply
 
LinkBack Thread Tools Search this Thread Display Modes
Old   November 28, 2019, 06:21
Post Partitioning Error on HPC: ***Cannot bisect a graph with 0 vertices!
  #1
MJM
New Member
 
Mathew Jo Mathew
Join Date: Jul 2018
Posts: 1
Rep Power: 0
MJM is on a distinguished road
Good Day Everyone,

I am running a conjugate heat transfer analysis on an array of solar receivers on a HPC cluster and I seems to have some trouble with successfully partitioning my model.

I am using 9 nodes (128 GB RAM) with 24 cores/node on the HPC. So in total I am using 216 cores for running the simulation in parallel. I generated my case file with the correct settings using 5 cores on my local PC and uploaded it on HPC just to run the simulation. I used a coarse meshed (tetrahedral cells) model for the case file and my plan was to replace it with a finely meshed model (which I generated on my local PC) on HPC because my local PC does not have the required memory to successfully import the finely meshed model into Fluent. Hence, on HPC once the coarse meshed model is replaced with the finely meshed one, I later try and convert the tetrahedral cells it to polyhedral cells, but I come across the following error in the output file:

Setup conversion to polyhedra.
Creation of polyhedra mesh might take a long time.
Converting domain to polyhedra...
Creating polyhedra zones.
Processing face zones............................................. .................................................. ................................
Processing cell zones.........
Building polyhedra mesh................................
Optimizing polyhedra mesh......... Cannot bisect a graph with 0 vertices! *You are trying to partition a graph into too many parts!
Cannot bisect a graph with 0 vertices!
You are trying to partition a graph into too many parts!
Cannot bisect a graph with 0 vertices!
You are trying to partition a graph into too many parts!
Cannot bisect a graph with 0 vertices!
You are trying to partition a graph into too many parts!
Cannot bisect a graph with 0 vertices!
You are trying to partition a graph into too many parts!
Cannot bisect a graph with 0 vertices!
You are trying to partition a graph into too many parts!
Cannot bisect a graph with 0 vertices!
You are trying to partition a graph into too many parts!
Cannot bisect a graph with 0 vertices!
You are trying to partition a graph into too many parts!
..... Cannot bisect a graph with 0 vertices!
You are trying to partition a graph into too many parts!
Cannot bisect a graph with 0 vertices!
*You are trying to partition a graph into too many parts!

===============Message from the Cortex Process================================

Fatal error in one of the compute processes.

================================================== ============================

I have tried using different partitioning method (such as the Cartesian-x,y and z; Principle Axes, Principle Strip etc) other than the default Metis option but ended up with the same error each time. I am not sure what is causing the error and would appreciate if someone could advise me on a way of solving this problem.


Many thanks

Regards,
MJM
MJM is offline   Reply With Quote

Reply

Tags
hpc cluster, partitioning mesh


Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are Off
Pingbacks are On
Refbacks are On


Similar Threads
Thread Thread Starter Forum Replies Last Post
Stress Graph & Shear Flow Graph & Displacement Graph in Tecplot or Paraview semih60 Tecplot 0 February 14, 2019 16:35
Weight in graph of mesh partitioning algo. Joseph Main CFD Forum 9 January 31, 2017 05:53
Can we merge HPC Pack licenses? Phillamon FLUENT 0 January 24, 2014 03:59


All times are GMT -4. The time now is 11:13.